Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq6 114 3e-20 seq4 107 4e-18 seq2 104 5e-17 seq7 87.8 4e-12 >seq6 Length=30767194 Score = 114 bits (126), Expect = 3e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||||| | || | ||| | ||||| |||||| |||||||||||| | Sbjct 23849105 ACCACCACGCAGACGAAGGACAAGATGGAGAGTAGACTCTTTCTGGATATTATAATCTGC 23849046 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || |||| || | ||||| || |||||||| || ||||| || || ||||| Sbjct 23849045 AAGGGTACGACCATCCTCAAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCCGGTGG 23848986 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || || ||||| || ||| ||| ||||| |||| || || || || Sbjct 23848985 GATCCCCTCCTTGTCTTGAATCTTAGCTTTGACATTGTCAATAGTGTCAGAGCTCTCAAC 23848926 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||||||||| || ||||| | || || | ||| |||||||| Sbjct 23848925 CTCCAGAGTAATGGTCTTCCCAGTCAGGGTCTTCACAAAAATCTGCAT 23848878 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||||| | || || || ||||| | ||| || ||| || ||||| Sbjct 23848651 ATACCACCTCTCAGACGCAGAACCAAGTGCAAAGTTGACTCCTTTTGGATGTTGTAATCC 23848592 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||| | || |||||||| ||||| || ||||| | ||||| ||||| || Sbjct 23848591 GCAAGGGTTCTACCGTCCTCCAATTGCTTACCGGCGAAGATAAGCCTCTGCTGATCTGGG 23848532 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || || || || ||| || | ||| || || Sbjct 23848531 GGGATACCCTCCTTGTCTTGGATCTTGGCCTTCACGTTATCAATGGTATCGGAGCTCTCG 23848472 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || |||||||| ||||| || |||| ||||| | || |||||||| Sbjct 23848471 ACCTCCAGAGTAATTGTTTTCCCGGTTAGGGTTTTGACGAAAATCTGCAT 23848422 Score = 86.0 bits (94), Expect = 1e-11 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| | ||| | || | ||| || || | || || ||| |||||||| Sbjct 19728845 ATACCACCTCGCAAACGGAGAACAAGATGCAAGGTGGATTCCTTCTGGATGCTATAATCA 19728786 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | |||| || | || || |||||||| || | ||||| || ||||| Sbjct 19728785 GCAAGGGTCCTACCATCCTCTAGCTGCTTTCCAGCAAAAATAAGCCTCTGCTGGTCAGGA 19728726 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG-ACGATTC 192485 || ||||||||||||||||| || || || ||||| ||| | ||| | || ||| Sbjct 19728725 GGGATTCCTTCTTTATCTTGAATCTTCGCCTTGACATTGTCTATGGTATCCGAACCCTTC 19728666 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | ||||| || || || || || | || |||| |||||| ||||| Sbjct 19728665 -ACCTTAAGAGTGATAGTCTTTCCGGTCAGCGTCTTAACAAATATTTGCAT 19728616 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| || || | || || || ||||| | || || ||| || || || Sbjct 23848423 ATACCACCTCTCAGTCGGAGAACCAAGTGCAAAGTCGATTCCTTTTGGATGTTGTAGTCG 23848364 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| | || |||||||| || || ||||| || || ||||| || || ||| Sbjct 23848363 GCGAGGGTTCGGCCGTCCTCCAATTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGT 23848304 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || || || || || || | ||| || || Sbjct 23848303 GGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCGATGGTATCAGAGCTCTCG 23848244 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| || ||||| || || |||| ||||| | || || ||||| Sbjct 23848243 ACTTCTAGGGTTATGGTCTTCCCGGTTAGGGTTTTGACGAAGATTTGCAT 23848194 >seq4 Length=25843236 Score = 107 bits (118), Expect = 4e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 |||||||| | || || | || || || | ||| | ||| ||| || || ||||| || Sbjct 12721891 ATACCACCACGCAGCCGGAGCACCAAGTGCAGAGTGGACTCCTTTTGA-ATGTTATAGTC 12721833 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | || | | |||| || | || || || |||||||| || ||||| || || || Sbjct 12721832 AGCAAGGGTCCTTCCATCCTCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGG 12721773 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || || || || || || ||||| || |||||| |||| ||| || ||| Sbjct 12721772 GGGAATACCCTCCTTGTCCTGGATTTTGGCCTTAACATTATCAATAGTATCAGAGCTTTC 12721713 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| |||||||||||||| || || | ||||| | |||||||||||| Sbjct 12721712 CACTTCCAGAGTAATGGTTTTCCCGGTCAGAGTTTTCACAAATATCTGCAT 12721662 Score = 98.7 bits (108), Expect = 2e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||| | || || | || || || | ||| | ||| ||| || || || || || Sbjct 12722119 ATCCCACCACGCAGTCGAAGCACCAAGTGCAGAGTGGACTCCTTTTGA-ATGTTGTAGTC 12722061 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | || | | |||| || | || || || |||||||| || ||||| || || || Sbjct 12722060 AGCAAGGGTCCTTCCATCCTCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGG 12722001 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || || || || || || ||||| || |||||| |||| ||| || ||| Sbjct 12722000 GGGAATACCCTCCTTGTCCTGGATTTTGGCCTTAACATTATCAATAGTATCAGAGCTTTC 12721941 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| |||||||||||||| || || | ||||| | |||||||||||| Sbjct 12721940 CACTTCCAGAGTAATGGTTTTCCCGGTCAGAGTTTTCACAAATATCTGCAT 12721890 Score = 87.8 bits (96), Expect = 4e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | |||||| | ||||| || | || | ||| || |||||| |||||| Sbjct 12761287 ATACCCCCACGAAGACGAAGCACTAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCA 12761346 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| || | || || ||||||||||| | ||||| || || ||| Sbjct 12761347 GCTAGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGT 12761406 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| || ||| || || ||| || | || || || Sbjct 12761407 GGAATGCCCTCTTTGTCTTGGATCTTAGCCTTGACGTTATCAATCGTGTCGGAGCTCTCA 12761466 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | ||| ||||| || || || | || || | ||| || |||||| Sbjct 12761467 ACCTCCAAAGTGATGGTCTTTCCGGTGAGAGTCTTGACAAAGATTTGCATT 12761517 >seq2 Length=30405870 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||| || | || | ||| ||||||| || || |||||||||||| Sbjct 22653458 ATTCCACCACGAAGGCGAAGGACAAGATGCAAAGTAGATTCCTTCTGGATATTATAATCT 22653517 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || | |||| || | || || || ||||| || | || ||||| |||||| Sbjct 22653518 GCCAAAGTCCTGCCATCCTCAAGCTGCTTTCCTGCAAAAATAAGCCTTTGTTGGTCAGGT 22653577 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| || || || ||||| ||| | ||| || || Sbjct 22653578 GGGATCCCTTCCTTATCTTGAATCTTTGCCTTCACATTGCCTATGGTATCAGAGCTCTCC 22653637 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||| || || || || || |||| ||| |||||||| Sbjct 22653638 ACATCAAGAGTGATGGTCTTGCCCGTCAAGGTCTTAACAAAGATCTGCAT 22653687 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| | ||| | || | ||| || || | || || ||||||||||||| Sbjct 22653686 ATACCACCTCGCAAACGGAGAACAAGATGCAAGGTGGGTTCCTTCTGGATATTATAATCA 22653745 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | |||| || | || || |||||||| || | ||||| || ||||| Sbjct 22653746 GCAAGGGTCCTACCATCCTCTAGCTGCTTTCCAGCAAAAATAAGCCTCTGCTGGTCAGGA 22653805 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||| ||||||||| || || || ||||| ||| | ||| || || Sbjct 22653806 GGGATTCCTTGTTTATCTTGAATCTTCGCCTTGACATTGTCTATGGTATCCGAACCCTCC 22653865 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| || || || ||||| || || |||| |||||| ||||| Sbjct 22653866 ACCTCCAGAGTGATAGTCTTTCCAGTCAAAGTCTTAACAAATATTTGCAT 22653915 Score = 91.5 bits (100), Expect = 3e-13 Identities = 147/211 (70%), Gaps = 8/211 (4%) Strand=Plus/Plus Query 192334 TGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGT 192393 || ||||||| || || || |||||||||| || || | |||| |||||||| Sbjct 22654422 TGCAAAGTAGATTCCTTCTGAATGTTATAATCAGCCAAAGTCCTACCATCTTCCAATTGC 22654481 Query 192394 TTACCAGCAAAGAT----TAAT----CTCTGTTGATCAGGTGGTATTCCTTCTTTATCTT 192445 || |||||||| || |||| ||||| || ||||| || || || || ||||| | Sbjct 22654482 TTTCCAGCAAATATAACTTAATAAGCCTCTGCTGGTCAGGCGGAATCCCCTCCTTATCCT 22654541 Query 192446 GTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTT 192505 |||| ||| | || ||| || |||| || || || || || || || || || | Sbjct 22654542 GTATCTTAGTCTTGACAATATCAATAGTGTCCGAGCTCTCCACCTCAAGGGTTATAGTCT 22654601 Query 192506 TACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | ||||| | ||||| | |||||||||||| Sbjct 22654602 TGCCAGTAAGGGTTTTCACAAATATCTGCAT 22654632 >seq7 Length=22388614 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| |||||||| | | ||||| |||| |||||||| ||||||||||| || ||||| Sbjct 12116185 GATGTTATAATCTGCAAGAGTTCGGCCATCCTCCAATTGCTTACCAGCAAAAATCAATCT 12116244 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 ||| |||||||| || || ||||| ||||| || Sbjct 12116245 CTGCTGATCAGGAGGGATGCCTTCCTTATCCTG 12116277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984477578179200