Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3 141 3e-28 seq6 114 4e-20 seq7 111 5e-19 >seq3 Length=27368013 Score = 141 bits (156), Expect = 3e-28 Identities = 287/420 (68%), Gaps = 16/420 (4%) Strand=Plus/Minus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| |||||||| || | | ||||| |||||||| || || ||||||||| | Sbjct 24978774 TAAACCCATCCATTTCAGTAAGCAACTGATTGAGTGTTTGCTCTCTCTCATCATTT---C 24978718 Query 288998 CTCTTGAATCACCCGAATC--GCTCCtttttt--tACCAACAGCATCAATTTCGTCAATG 289053 ||| |||| | || | |||| | | | ||||||||||| || || |||||| Sbjct 24978717 CTC------CACCA-ATTCCTGTTCCTCTCTGCCTCCCAACAGCATCTATCTCATCAATG 24978665 Query 289054 AAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCT 289113 |||| || || || ||||| | | || | ||||| || || || | || ||| Sbjct 24978664 AAAACCAAGCATGGGGAATTGGCTTTAGCCTTGTTGAATAAATCCCTCACTCTAGAAGCT 24978605 Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTT 289173 || | || ||| |||| |||| || || || | || | || ||| | || | Sbjct 24978604 CCTACTCCTACAAACATCTCTATGAACTCTGACCCTGACAGAGAAAAGAAAGGGACCCCT 24978545 Query 289174 GCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAAT 289233 ||||| ||||||| ||| | ||||| |||||||| || || |||||||| || |||| Sbjct 24978544 GCTTCTCCTGCTATGGCCTTGGCCAGCAGTGTCTTTCCAGTCCCAGGTGGCCCTACTAAA 24978485 Query 289234 AGAACTCCCTTTGGTACTT-TTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAA 289292 ||||| |||||||| | || |||| ||| ||| | | ||||| || | || || || Sbjct 24978484 AGAAC-CCCTTTGGGAATTCTTGCTCCAACAGCAGAAAACTTCTCTGGAGTTTTCAAGAA 24978426 Query 289293 TTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 ||| ||||| || | | || | ||||| |||||| |||||||||||| |||| || Sbjct 24978425 TTCAACAATCTCTTGGAAATCTTGCTTTGCTTCATCAACCCCTGCTACATCATCAAATGT 24978366 Score = 134 bits (148), Expect = 4e-26 Identities = 346/518 (67%), Gaps = 22/518 (4%) Strand=Plus/Minus Query 288843 CACCCTCCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTT 288902 |||| ||||||||| | |||| | ||| || | ||| | || || || ||||| Sbjct 9413103 CACCTGCCTATCAAATCGGCCAGGCCTCAATAAGGCAGAGTCAAGAATGTCTGCCCTGTT 9413044 Query 288903 TGTTGCTGCCAATACAACAATAGATTCGGT-TTGC--TTAAATCCATCCATACTTGTTAA 288959 || ||||| | |||| ||| | || |||| | ||| |||||||| ||| || Sbjct 9413043 AGTCGCTGCAACCACAATGATAC---CAGTGTTGCCCTCAAAACCATCCATTTCTGTCAA 9412987 Query 288960 AATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATC--G 289017 || |||||||| |||||||| |||||||||||| || | |||| | || | Sbjct 9412986 AAGCTGATTAAGGGTTTGTTCTCTTTCATCATTT---CCCC------CACCA-ATTCCAG 9412937 Query 289018 CTCCtttttttA--CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTT 289075 |||| ||| ||||||||||||||||| |||| || | | || || | ||| | Sbjct 9412936 TTCCTCTTTGCCGTCCAACAGCATCAATTTCATCAACAAATACAATGCAAGGTGCATTCT 9412877 Query 289076 GTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTA 289135 | | || | ||| | || | || ||||| || |||| ||||||| ||||||| | Sbjct 9412876 CTTTGGCCTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACACCAACAAACATTTCAA 9412817 Query 289136 CAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTC 289194 |||| |||||| | || | | || | |||| ||| ||||| || || | |||| | Sbjct 9412816 CAAACTCAGAACCTGAGA-TGGAGAAAAATGGAACACCAGCTTCACCAGCAATTGCCTTT 9412758 Query 289195 GCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTT 289254 || | || ||||| || ||||| || || || | | ||||| || || || | | Sbjct 9412757 GCTAACAGAGTCTTTCCAGTTCCTGGAGGACCAACAAGAAGAACCCCTTTAGGAATTCGA 9412698 Query 289255 GCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCA 289314 |||||| ||| | | ||||||| |||| || ||||| |||| ||| ||| || Sbjct 9412697 GCCCCAACAGCAGTGAACCTCTCAGGCTTCTTCAAGAATTCCACAACCTCCACAAAATCC 9412638 Query 289315 TATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | || || ||||| || || |||||| |||| || Sbjct 9412637 TGCTTGGCTTCATCTACCCCAGCAACATCATCAAATGT 9412600 >seq6 Length=30767194 Score = 114 bits (126), Expect = 4e-20 Identities = 218/316 (69%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||| |||||||| || ||||| || || | || || | |||||| || | | Sbjct 24985050 CCAATTGCATCAATCTCATCAATAAATATTATACTGGGTGCGCATTGTCTTGCCTCTTGA 24985109 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 ||||| || || | |||| |||| ||||||| ||||||| | ||| || ||| | Sbjct 24985110 AATAAGCTTCGAACCCTTGATGGCCCAACACCAACAAACATTTCCATAAAATCTGAACCA 24985169 Query 289150 GATACTTGAATGAAT-GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 |||| | || ||| | || | | ||| ||||| |||| | || ||||| ||||| Sbjct 24985170 GATA-TAGATAGAAAAGGCACCCTAGATTCACCTGCAGTTGCCTTTGCAAGAAGCGTCTT 24985228 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACT 289267 || |||||||| || || | | ||| | || ||||| | |||||| |||| | || Sbjct 24985229 TCCCGTTCCAGGAGGGCCAACAAGAAGAGCACCTTTTGGAATTTTTGCTCCCAACTC-CT 24985287 Query 289268 TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCAT 289327 ||||||| |||| |||||| ||| | |||| ||| | ||| | || ||||||| Sbjct 24985288 CGTATTTCTTAGGGTTCTTTAGAAAGTGCACAAACTCCATTATTTCTTGCTTAGCCTCAT 24985347 Query 289328 CACATCCTGCTACATC 289343 |||| || |||||||| Sbjct 24985348 CACAGCCAGCTACATC 24985363 >seq7 Length=22388614 Score = 111 bits (122), Expect = 5e-19 Identities = 230/340 (68%), Gaps = 2/340 (1%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || || |||||| | |||||| || |||||| ||| | | | | Sbjct 17463606 ATTTCTGACAGTGCCATCATATTTGACCATAATATCCTCCATAGCCTTCACCAGTCTCCT 17463547 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||||| || ||||| |||||| || || || ||||| || ||||| | | ||||| Sbjct 17463546 TTGAATGTACCCAGTCTCAGATGTCTTGACCGCAGTATCTATAAGACCTTCCCTCCCACC 17463487 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| || || | ||| | || || ||| | | |||| | || || || Sbjct 17463486 CATAGCATGAAAAAAGAACTCCTGTGGAGTTAACCCACGCAGGTAGGAATTTTCTACAAA 17463427 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT-TCTCAT 302776 ||||| || || || || || || ||||| |||| |||| || | | | Sbjct 17463426 TCCACGACTTTCTGGTCCATAATCATCTTTAGTGAAGTGGGGCAAAGTCCGGTCTATGA- 17463368 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836 | ||||| ||||||||||| || |||||||||||||| |||| || | | ||||||| | Sbjct 17463367 ACCCGTAAGGGATACGCTTACCCTCAACGTTCTGCTGCCCCACACAAGCAGTCATCTGGG 17463308 Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 | || || | | ||| || ||||| || || | ||||| Sbjct 17463307 ATATGTTGATAAAACTCCCTTTGGACCCTGCTGTAACCAT 17463268 Score = 100 bits (110), Expect = 8e-16 Identities = 102/131 (78%), Gaps = 3/131 (2%) Strand=Plus/Minus Query 301830 GGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATTCAG 301889 ||||||||| |||| || || ||| || || |||||||| |||||||||||||||| Sbjct 17464332 GGGAACACCTAGGGTAACATTCT--TTGCACTCA-CACCAGCATAGTGGAAAGTATTCAG 17464276 Query 301890 AGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATACCAACCATTTCTCC 301949 || | ||||| | |||||||||||| |||||| |||| ||||| |||||| || Sbjct 17464275 TGTCATCTGAGTGGCGGGCTCACCAATAGATTGTGCAGCAACGCAACCAATCATTTCGCC 17464216 Query 301950 TGGTGCTACAA 301960 |||||||||| Sbjct 17464215 AGGTGCTACAA 17464205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471813979328704