Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq192 558 1e-154 seq2 489 5e-134 seq6 98.7 3e-16 >seq192 Length=157790 Score = 558 bits (618), Expect = 1e-154 Identities = 712/964 (74%), Gaps = 16/964 (2%) Strand=Plus/Minus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 ||||||||||| |||| |||||||| ||||||| || | | | | || || Sbjct 1331 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 1272 Query 19592 ATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 |||| || |||||||| |||||||| || || ||||| || |||||||| || || || Sbjct 1271 -TCTGTATTTATTATTGCTTTCATTGCTGCACCTCCAGTAGATATTGATGGTATTCGTGA 1213 Query 19651 ACCCGTATCCGGTAGCCTT-CTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGA 19709 ||| || || || | | || |||||||||||||| || || || || ||| | |||| | Sbjct 1212 ACCTGTTTCTGG-ATCTTTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTA 1154 Query 19710 GCA--GCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGA 19767 | ||| || || || | ||||| ||||| || |||||||| ||| ||||||| Sbjct 1153 CCTCTGCA--GCTATAGGTTTGCACTTTTACCCGATATGGGAAGCGGCTTCCGTTGATGA 1096 Query 19768 ATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCAT--C 19825 |||| | |||||||| || || | |||| | || | |||||| | |||| | | Sbjct 1095 ATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGC 1036 Query 19826 TATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATT 19885 | |||| ||||||| || |||||||||||||| | || || || ||| | ||||||||| Sbjct 1035 T-TGCT-ACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATT 978 Query 19886 TGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTT 19944 |||||| || || ||||| |||||||| || |||| || ||||| | | || || | Sbjct 977 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATATATCCAAT 919 Query 19945 TGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACAT 20004 |||||| || ||||| || || | |||||| | || ||||| ||||| ||||||| ||| Sbjct 918 TGGTCAAGGAAGCTTTTCTGACGGTATGCCCCTAGGAATCTCCGGTACTTTCAACTTCAT 859 Query 20005 GTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGC 20064 | | |||||||||||||| || ||||| || |||||||| || |||||| | || || || Sbjct 858 GATTGTATTCCAAGCCGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGC 799 Query 20065 TGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCT 20124 |||||||||||| || || ||||||||||| ||||| || || |||| || || | | Sbjct 798 TGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGGTC-CTTGGTAACCTCTAGTT 740 Query 20125 TG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAG 20183 || | | || || || ||| | ||| | || | ||||||| || || ||||| | Sbjct 739 TGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGG 680 Query 20184 AAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACG 20243 |||| |||||||| |||||||||||||||||||| ||||| || |||||||||||||| | Sbjct 679 AAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATG 620 Query 20244 CTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGA 20303 || |||||||||| |||||| |||| |||||||| ||||| ||||| || ||||| | Sbjct 619 CTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTA 560 Query 20304 TTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTA 20363 | ||||| | || || || | || ||||| || || | || ||||| || || | Sbjct 559 TCTGGTTTACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAATTTCA 500 Query 20364 ACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATC 20423 | || || | | || | | |||||||| ||| ||||||||||||| ||| | || | Sbjct 499 ATCAATCTGTAGTTGATAGTCAGGGTCGTGTAATTAATACTTGGGCTGATATTATTAACC 440 Query 20424 GTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACC 20483 | ||||| || || | || || ||||||||||| ||||| ||||| ||||| || || | Sbjct 439 GCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCCCATAATTTCCCTCTAGATC 380 Query 20484 TTGC 20487 | || Sbjct 379 TAGC 376 >seq2 Length=30405870 Score = 489 bits (542), Expect = 5e-134 Identities = 700/966 (72%), Gaps = 20/966 (2%) Strand=Plus/Plus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 ||| ||||||| |||| |||||||| ||||||| || | | ||| || | Sbjct 16144598 AACTGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTA-TTGACCACAAC 16144656 Query 19592 ATCTG--CTTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCG 19649 |||| ||| |||||| | |||||||| || || ||||| || |||||||| || || Sbjct 16144657 TTCTGTACTT-ATTATTACTTTCATTGCTGCACCTCCAGTAGATATTGATGGTATTCGTA 16144715 Query 19650 AACCCGTATCCGGTAGCCTT-CTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCG 19708 |||| || || || | | || |||||||||||||| || || || || ||| | |||| Sbjct 16144716 AACCTGTTTCTGG-ATCTTTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCT 16144774 Query 19709 AGCA--GCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATG 19766 | | ||| || || || | ||||| ||||| || |||||||| ||| |||||| Sbjct 16144775 ACCTCTGCA--GCTATAGGTATGCACTTTTACCCGATATGGGAAGCGGCTTCCGTTGATG 16144832 Query 19767 AATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCA-TTGGCAT- 19824 ||||| | |||||||| || || | |||| | || | |||||| ||| |||| | Sbjct 16144833 AATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTC-TCACTTGGTGTA 16144891 Query 19825 -CTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGA 19883 || |||| ||||||| || |||||||| |||| | || || || | | | ||||||| Sbjct 16144892 GCT-TGCT-ACATGGGTCGTGAGTGGGAGATTAGTTTCCGTCTGGGTAGGCGCCCTTGGA 16144949 Query 19884 TTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCG 19942 || |||||| || || ||||| |||||||| || |||| || ||||| | | || || Sbjct 16144950 TTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATATATCCA 16145008 Query 19943 TTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTAC 20002 ||||||| || ||||| || || | ||| | | || ||||| ||||| ||||||| | Sbjct 16145009 ATTGGTCAAGGAAGCTTTTCTGACGTAATGTCCCTAGGAATCTCCGGTACTTTCAACTTC 16145068 Query 20003 ATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTG 20062 ||| | ||||||||||| | || ||||| || |||||||| || |||||| | || | Sbjct 16145069 ATGATTGTATTCCAAGCTAAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGCA 16145128 Query 20063 GCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCG 20122 || ||||||||||| || || ||||||||||| ||||| || || |||| || ||| | Sbjct 16145129 GCCGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGGTC-CTTGGTAACCCCTAG 16145187 Query 20123 CTTGTGC-GTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGA 20181 ||| | | || || | || | ||| | || | ||||||| || || ||||| Sbjct 16145188 TTTGATCAGGGAAACCATAAAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGA 16145247 Query 20182 AGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATA 20241 ||||| |||||||| ||| |||||||||||||||| ||||| || |||||||||||||| Sbjct 16145248 GGAAGAAACCTATAATATCATAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATA 16145307 Query 20242 CGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGG 20301 ||| |||||||||| ||||| |||| |||||||| ||||| ||||| || ||||| Sbjct 16145308 TGCTAGTTTCAACAATTCTTGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGG 16145367 Query 20302 GATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTT 20361 || ||||| | | || || | ||| ||||| || || | || ||||| || || Sbjct 16145368 TATCTGGTTTACCACTTTAGGTATCAGTACTATGGCTTTCAACTTAAATGGTTTTAATTT 16145427 Query 20362 TAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAA 20421 || || || | | || | | |||||||| ||| ||||||||||||| ||| | || Sbjct 16145428 CAATCAATCTGTAGTTGATAGTCAGGGTCGTGTAATTAATACTTGGGCTGATATTATTAA 16145487 Query 20422 TCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGA 20481 || | ||| || || | || || ||||||||||| ||||||||||| ||||| || || Sbjct 16145488 CCGCGTTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGA 16145547 Query 20482 CCTTGC 20487 || || Sbjct 16145548 TCTAGC 16145553 Score = 89.7 bits (98), Expect = 2e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 20162 GGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTT 20221 |||||||| || | ||||| ||||| |||||||| |||||||||||||||||||| ||| Sbjct 26097516 GGTTACAAATTCGATCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTT 26097575 Query 20222 GGACGTTTGATCTT 20235 || || |||||||| Sbjct 26097576 GGCCGATTGATCTT 26097589 >seq6 Length=30767194 Score = 98.7 bits (108), Expect = 3e-16 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 20162 GGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTT 20221 ||||||| || || ||||| ||||| |||||||| || ||||||||||||||||| ||| Sbjct 12498437 GGTTACATATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCCGCTCATGGTTATTTT 12498378 Query 20222 GGACGTTTGATCTTCCAATACGCT 20245 || || |||||||||||||| ||| Sbjct 12498377 GGCCGATTGATCTTCCAATATGCT 12498354 Score = 93.3 bits (102), Expect = 1e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 20162 GGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTT 20221 ||||||| || || ||||| ||||| |||||| | || ||||||||||||||||| ||| Sbjct 12498661 GGTTACATATTCGGTCAAGAGGAAGAAACCTATTATATTGTAGCCGCTCATGGTTATTTT 12498602 Query 20222 GGACGTTTGATCTTCCAATACGCT 20245 || || |||||||||||||| ||| Sbjct 12498601 GGCCGATTGATCTTCCAATATGCT 12498578 Score = 82.4 bits (90), Expect = 2e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 20387 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTG 20446 |||||||| ||| ||||||||||||| ||| | || | ||||| || || | || || Sbjct 16007623 GGTCGTGTAATTAATACTTGGGCTGATATTATTAACCACGCTAACCTTGGTATGGACGTT 16007564 Query 20447 ATGCATGAACGGAATGCTCATAACTTCC 20474 ||||||||||| ||||||||||| |||| Sbjct 16007563 ATGCATGAACGTAATGCTCATAATTTCC 16007536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148828460670336