Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq192 553 5e-153 seq2 484 2e-132 seq6 104 7e-18 >seq192 Length=157790 Score = 553 bits (612), Expect = 5e-153 Identities = 707/963 (73%), Gaps = 12/963 (1%) Strand=Plus/Minus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 ||||||||||| |||| |||||||| ||||||| || | | | | || || Sbjct 1331 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 1272 Query 28720 ATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 |||| || |||||||| |||||||| ||||| ||||| || |||||||| || || || Sbjct 1271 -TCTGTATTTATTATTGCTTTCATTGCTGCACCTCCAGTAGATATTGATGGTATTCGTGA 1213 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 |||||| ||||| | | || ||||||||||| || || || || ||| | | || | Sbjct 1212 ACCTGTTTCTGGATCTTTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 1153 Query 28839 CA--GCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAA 28896 | ||| || || || | ||||| ||||| || |||||||| ||| |||||||| Sbjct 1152 CTCTGCA--GCTATAGGTTTGCACTTTTACCCGATATGGGAAGCGGCTTCCGTTGATGAA 1095 Query 28897 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGT--CT 28954 ||| | |||||||| || || | |||| | || | |||||| | |||| || || Sbjct 1094 TGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT 1035 Query 28955 ATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTT 29014 |||| ||||||| || |||||||||||||| | || || || ||| | || |||||| Sbjct 1034 -TGCT-ACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTG 977 Query 29015 GTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCG 29074 ||| ||||| |||||||| || ||||| || |||| |||||| | | || ||| | | Sbjct 976 CTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATATATCCAATTG 917 Query 29075 GTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGC 29134 ||||||| ||| |||| ||||| | || || || || || ||||||| |||| Sbjct 916 GTCAAGGAAGCTTTTCTGACGGTATGCCCCTAGGAATCTCCGGTACTTTCAACTTCATGA 857 Query 29135 TGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTG 29194 | || ||||||||||| || ||||| || |||||||| || |||||| | ||||| |||| Sbjct 856 TTGTATTCCAAGCCGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTG 797 Query 29195 GAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTG 29254 | || ||||| ||||| ||||| ||||| ||||| || || | || || || | | ||| Sbjct 796 GTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGGTCCTTGGTAACCTC-TAGTTTG 738 Query 29255 TGC-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAA 29313 | | || || || ||| | ||| || | ||||||| || || ||||| ||| Sbjct 737 ATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAA 678 Query 29314 GAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCT 29373 || || ||||| |||||||||||||| ||||| ||||| || |||||||||||||||||| Sbjct 677 GAAACCTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCT 618 Query 29374 TCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATT 29433 |||||| ||| |||||| |||| |||||||| ||||| ||||| || ||||| || Sbjct 617 AGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATC 558 Query 29434 TGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAAC 29493 ||||| | || || || | || ||||| || || | || |||||||| || || Sbjct 557 TGGTTTACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAATTTCAAT 498 Query 29494 CAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGC 29553 || || | | || | | |||||||| |||||||||||||||||| || | || ||| Sbjct 497 CAATCTGTAGTTGATAGTCAGGGTCGTGTAATTAATACTTGGGCTGATATTATTAACCGC 438 Query 29554 GCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTG 29613 |||||||| || | ||||| |||||||| |||||||| ||||| ||||| || ||||| Sbjct 437 GCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCCCATAATTTCCCTCTAGATCTA 378 Query 29614 GCT 29616 ||| Sbjct 377 GCT 375 >seq2 Length=30405870 Score = 484 bits (536), Expect = 2e-132 Identities = 695/965 (72%), Gaps = 16/965 (2%) Strand=Plus/Plus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 ||| ||||||| |||| |||||||| ||||||| || | | ||| || | Sbjct 16144598 AACTGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTA-TTGACCACAAC 16144656 Query 28720 ATCTG--CTTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCG 28777 |||| ||| |||||| | |||||||| ||||| ||||| || |||||||| || || Sbjct 16144657 TTCTGTACTT-ATTATTACTTTCATTGCTGCACCTCCAGTAGATATTGATGGTATTCGTA 16144715 Query 28778 AACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGA 28837 ||||||| ||||| | | || ||||||||||| || || || || ||| | | || | Sbjct 16144716 AACCTGTTTCTGGATCTTTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTA 16144775 Query 28838 GCA--GCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGA 28895 | ||| || || || | ||||| ||||| || |||||||| ||| ||||||| Sbjct 16144776 CCTCTGCA--GCTATAGGTATGCACTTTTACCCGATATGGGAAGCGGCTTCCGTTGATGA 16144833 Query 28896 ATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCA-TTGGCGT-- 28952 |||| | |||||||| || || | |||| | || | ||||| |||| |||| || Sbjct 16144834 ATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTT-CTCACTTGGTGTAG 16144892 Query 28953 CTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGAT 29012 || ||| |||||||| || |||||||| |||| | || || || | | | || ||||| Sbjct 16144893 CT-TGC-TACATGGGTCGTGAGTGGGAGATTAGTTTCCGTCTGGGTAGGCGCCCTTGGAT 16144950 Query 29013 TTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATT 29072 | ||| ||||| |||||||| || ||||| || |||| |||||| | | || ||| | Sbjct 16144951 TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATATATCCAAT 16145010 Query 29073 CGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACAT 29132 |||||||| ||| |||| ||| | | || || || || || ||||||| ||| Sbjct 16145011 TGGTCAAGGAAGCTTTTCTGACGTAATGTCCCTAGGAATCTCCGGTACTTTCAACTTCAT 16145070 Query 29133 GCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGC 29192 | | || |||||||| | || ||||| || |||||||| || |||||| | |||| || Sbjct 16145071 GATTGTATTCCAAGCTAAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGCAGC 16145130 Query 29193 TGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCT 29252 || || ||||| ||||| ||||| ||||| ||||| || || |||| | ||| | | Sbjct 16145131 CGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGGTC-CTTGGTAACCCCTAGTT 16145189 Query 29253 TG-TGCGTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAG 29311 || | | || || | || | ||| || | ||||||| || || ||||| | Sbjct 16145190 TGATCAGGGAAACCATAAAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGG 16145249 Query 29312 AAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATG 29371 |||| || ||||| ||| |||||||||| ||||| ||||| || |||||||||||||||| Sbjct 16145250 AAGAAACCTATAATATCATAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATG 16145309 Query 29372 CTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGA 29431 || |||||| ||| ||||| |||| |||||||| ||||| ||||| || ||||| | Sbjct 16145310 CTAGTTTCAACAATTCTTGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTA 16145369 Query 29432 TTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTA 29491 | ||||| | | || || | ||| ||||| || || | || |||||||| || | Sbjct 16145370 TCTGGTTTACCACTTTAGGTATCAGTACTATGGCTTTCAACTTAAATGGTTTTAATTTCA 16145429 Query 29492 ACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATC 29551 | || || | | || | | |||||||| |||||||||||||||||| || | || | Sbjct 16145430 ATCAATCTGTAGTTGATAGTCAGGGTCGTGTAATTAATACTTGGGCTGATATTATTAACC 16145489 Query 29552 GCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATC 29611 ||| |||||| || | ||||| |||||||| |||||||||||||| ||||| || |||| Sbjct 16145490 GCGTTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGATC 16145549 Query 29612 TGGCT 29616 | ||| Sbjct 16145550 TAGCT 16145554 Score = 80.6 bits (88), Expect = 8e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 29290 GGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTT 29349 |||||||| || | ||||| ||||| || ||||| |||||||||||||| ||||| ||| Sbjct 26097516 GGTTACAAATTCGATCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTT 26097575 Query 29350 GGACGTTTGATCTT 29363 || || |||||||| Sbjct 26097576 GGCCGATTGATCTT 26097589 >seq6 Length=30767194 Score = 104 bits (114), Expect = 7e-18 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 29470 AATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAAT 29529 || || || |||||||| || || || || | | || | | |||||||| |||||| Sbjct 16007668 AAACTCAATGGTTTTAATTTCAATCAATCTGTAGTTGATAGTCAGGGTCGTGTAATTAAT 16007609 Query 29530 ACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAAT 29589 |||||||||||| || | || | ||||||||| || | || || |||||||| |||||| Sbjct 16007608 ACTTGGGCTGATATTATTAACCACGCTAACCTTGGTATGGACGTTATGCATGAACGTAAT 16007549 Query 29590 GCTCATAACTTCCCACTTGATCTGGCT 29616 |||||||| |||| || ||| | ||| Sbjct 16007548 GCTCATAATTTCCATCTAGATGTAGCT 16007522 Score = 93.3 bits (102), Expect = 1e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 29290 GGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTT 29349 ||||||| || || ||||| ||||| || ||||| || ||||||||||| ||||| ||| Sbjct 12498437 GGTTACATATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCCGCTCATGGTTATTTT 12498378 Query 29350 GGACGTTTGATCTTCCAATATGCT 29373 || || |||||||||||||||||| Sbjct 12498377 GGCCGATTGATCTTCCAATATGCT 12498354 Score = 89.7 bits (98), Expect = 2e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 29290 GGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTT 29349 ||||||| || || ||||| ||||| || ||| | || ||||||||||| ||||| ||| Sbjct 12498661 GGTTACATATTCGGTCAAGAGGAAGAAACCTATTATATTGTAGCCGCTCATGGTTATTTT 12498602 Query 29350 GGACGTTTGATCTTCCAATATGCT 29373 || || |||||||||||||||||| Sbjct 12498601 GGCCGATTGATCTTCCAATATGCT 12498578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146665265602432