Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3 298 8e-75 seq6 113 6e-19 >seq3 Length=27368013 Score = 298 bits (330), Expect = 8e-75 Identities = 400/547 (73%), Gaps = 16/547 (3%) Strand=Plus/Plus Query 1455734 AACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCA 1455792 |||||| ||||||| ||| ||||||| |||| |||| | || ||||| |||||| | Sbjct 26802941 AACCCGGACCGCTTCTGTA-TGTTCCCGATCCAATACCCGGAAATCTGGGAGATGTAC-A 26802998 Query 1455793 AAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGAC--ACGGT 1455850 | ||||||||||||||||| ||||||||||||||||| || ||| || ||| ||| Sbjct 26802999 AGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGGTTGATCTCTGCCAGGACCTACG-- 26803056 Query 1455851 CCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTT 1455910 ||| |||| | || | | | |||| || ||||||| ||||| |||||||| || Sbjct 26803057 CCATTGGGAAACTCTAACCCCTGGCGAGAAGCACTTCATCACCCACGTGCTCGCCTTCTT 26803116 Query 1455911 TCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCC 1455970 ||| ||| || |||||||| ||||| || ||||| | || ||||| || |||| Sbjct 26803117 -CGCTGCCTCTGACGGCATCGTTTTGGAGAATCTTGCCGGAAGGTTCATGAAGGAAGTCC 26803175 Query 1455971 AATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTG 1456030 | | | ||||| || || ||||| ||||||||||||||||| ||||||||||| | Sbjct 26803176 AGGTCTCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCG 26803235 Query 1456031 AAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCT 1456090 | | ||| ||||| | || |||||| |||||||| ||| ||||||| || || | Sbjct 26803236 AGATGTACAGCCTCCTTCTGGAGACCTACATCAAGGACTCGGACGAGAAGAACAGGCTTT 26803295 Query 1456091 TTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGA 1456150 ||| ||||||||| || | || | || | ||| |||||| | ||||| | |||| Sbjct 26803296 TTCACGCCATCGATACCATTCCCTGCGTCACGAAGAAGGCCCAGTGGGCCCTACGCTGGA 26803355 Query 1456151 TCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGG 1456208 || || ||| || | ||||| |||||| |||| | |||||| |||| || | Sbjct 26803356 TC------GACGGCTCAGAATCGTTTGCGGAGCGGATCGTGGCCTTTGCTTGCGTGGAAG 26803409 Query 1456209 GCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGC 1456268 | || || |||||||||||||| ||||| || |||||||| ||||||||||| | |||| Sbjct 26803410 GGATATTCTTCTCGGGCAGTTTTTGCGCGATATTTTGGCTAAAGAAGCGCGGGTTAATGC 26803469 Query 1456269 CCGGTCT 1456275 | || || Sbjct 26803470 CGGGACT 26803476 >seq6 Length=30767194 Score = 113 bits (124), Expect = 6e-19 Identities = 168/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||| || ||||| ||||||||| | || || ||| |||| |||| || Sbjct 24549219 ATCTTCAAGGTCCTGAAGCAAGTGCACCCCGATATCG---GG--ATC-TCCAGCAAGGCC 24549272 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCG-GCACCGAGGCCGG 725029 ||| |||||||||| || |||||||||| |||| ||| ||| |||||| Sbjct 24549273 ATGGGGATCATGAACAGCTTCATCAACGACATATTCGAGAAGCTCGCGCAG-GAGGCCTC 24549331 Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 || |||| |||| ||||||| ||| || |||| |||||||||||||| || Sbjct 24549332 ACGATTGGCTCGCTACAACAAGAAGCCCACCATTACGTCGCGAGAGATCCAGACCGCGGT 24549391 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| || ||| ||| || || |||| |||||||| ||||||||||||| Sbjct 24549392 CAGGCTGGTCCTGCCCGGTGAGCTCGCCAAACACGCCGTTTCCGAGGGCACCA 24549444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177792681247104