Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3 109 7e-19 seq1 98.7 1e-15 >seq3 Length=27368013 Score = 109 bits (120), Expect = 7e-19 Identities = 303/462 (66%), Gaps = 12/462 (3%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATG---CCAGTCTCATTGTCA 11539 ||||| || || | | ||||| || |||| |||||||| ||||| | ||| Sbjct 9413063 TCAAGAATGTCTGCCCTGTTAGTCGCTGCAA---CCACAATGATACCAGTGTTGCCCTCA 9413007 Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || |||||||| || || | | ||||||| ||||||||||| ||||||||| | | Sbjct 9413006 AAACCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCTCTTTCATCATTTCC---C 9412950 Query 11600 ATACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 |||| |||| | | |||| || || |||||||| ||||||| || ||||| Sbjct 9412949 CCACCAATTCCAGTTCCTCTTTGCCGTCCAACAGCATCAATTTCATCAACAAATACAATG 9412890 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 || ||| ||| || ||| | | ||| ||||| ||||| | ||||| |||||| Sbjct 9412889 CAAGGTGCATTCTCTTTGGCCTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACACCA 9412830 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCC 11776 |||||||| || ||||| | | | ||| || ||||| ||| | |||||| Sbjct 9412829 ACAAACATTTCAACAAACTCAGAACCTGAGATGGAGAAAAATGGAACACCAGCTTCACCA 9412770 Query 11777 GCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCT 11836 || || || || | || |||||||| || ||||| ||| | ||||| | ||| Sbjct 9412769 GCAATTGCCTTTGCTAACAGAGTCTTTCCAGTTCCTGGAGGACCAACAAGAAGAACCCCT 9412710 Query 11837 CGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATC 11896 || || || ||| || | ||||| || | ||| | || ||||||| | Sbjct 9412709 TTAGGAATTCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTCAAGAATTCCACAACC 9412650 Query 11897 TCTTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCA 11938 || ||| || | ||||| | || | ||| |||||||| Sbjct 9412649 TCCACAAAATCCTGCTTGGCTTCATCTACCCCAGCAACATCA 9412608 >seq1 Length=47851208 Score = 98.7 bits (108), Expect = 1e-15 Identities = 216/319 (68%), Gaps = 6/319 (2%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||||||||||||||| || | | |||||||| || || || ||||||||||| | Sbjct 32999678 AAAGCCATCCATCTCCGTCAACAGCTGATTAATGGTCTGCTCCCTCTCATCATT--CCCA 32999735 Query 11599 CATACC--ACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | || ||| || | | ||| | ||||| ||||||||||| |||||||| ||||| Sbjct 32999736 CCTCCCATACCTGCTCCTCTCTGCCTCCCCACTGCATCAATCTCGTCAATGAACACAATG 32999795 Query 11657 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || | ||| | ||| | || || | || || || || |||||||| || Sbjct 32999796 CACGG-CGCTTTCGACTTGGCCTTCTCGAACAAGTCCCGCACTCTCGACGCACCCACTCC 32999854 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 ||||||| ||||| || | || || | ||| || || || || | || || Sbjct 32999855 CACAAACAATTCCACGAACTCTGAAGCTGCGCAAGAGAAAAACGGCACCCCAGCCTCGCC 32999914 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCC 11835 || | ||| || || || |||||||| || ||||| || |||| | | ||| ||| Sbjct 32999915 GGCCACGGCCCGAGCCAGAAGGGTCTTGCCGGTACCAGGTGGACCCACCAAAAGACAGCC 32999974 Query 11836 TCGGGGGATCTTGGCACCA 11854 | ||||| ||||| ||| Sbjct 32999975 TTTTGGGATTTTGGCTCCA 32999993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030492723200