Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3 122 1e-22 seq1 89.7 6e-13 >seq3 Length=27368013 Score = 122 bits (134), Expect = 1e-22 Identities = 307/461 (67%), Gaps = 12/461 (3%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || || | | || ||||| || | |||| ||||| || | |||||| Sbjct 9413063 TCAAGAATGTCTGCCCTGTTAGTCGCTGCAACCACAATGATACCAGTGTTGCCCTCAAAA 9413004 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 |||||||| ||||||||||| || |||| |||||||| | ||||||||| | | | Sbjct 9413003 CCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCTCTTTCATCATT---TCCCCCA 9412947 Query 9677 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 ||| |||| | | |||| ||| || |||||||| ||||||| || || ||||| Sbjct 9412946 CCAATTCCAGTTCCTCTTTGCCGTCCAACAGCATCAATTTCATCAACAAATACAATGCAA 9412887 Query 9734 GGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 9791 ||| ||| || || |||| ||| ||||| || || || || || ||||||| Sbjct 9412886 GGTGCATTCTCTTTGGC--CTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACACCAA 9412829 Query 9792 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 9850 ||||||| || ||||| | | | | | || | || || || ||| || |||||| Sbjct 9412828 CAAACATTTCAACAAACTCAGAACCTG-AGATGGAGAAAAATGGAACACCAGCTTCACCA 9412770 Query 9851 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 9910 ||||| || || | |||||||| || || ||||| ||| | || || | ||| Sbjct 9412769 GCAATTGCCTTTGCTAACAGAGTCTTTCCAGTTCCTGGAGGACCAACAAGAAGAACCCCT 9412710 Query 9911 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATT 9970 ||||| || ||| || | | |||||||| | ||| | || ||||||| Sbjct 9412709 TTAGGAATTCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTCAAGAATTCCACAACC 9412650 Query 9971 TCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 10011 || | || || | ||||| | || | ||| ||||||| Sbjct 9412649 TCCACAAAATCCTGCTTGGCTTCATCTACCCCAGCAACATC 9412609 >seq1 Length=47851208 Score = 89.7 bits (98), Expect = 6e-13 Identities = 190/280 (68%), Gaps = 8/280 (3%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||| ||||| || || ||||| || || |||| ||||||||| | Sbjct 32999678 AAAGCCATCCATCTCCGTCAACAGCTGATTAATGGTCTGCTCCCTCTCATCATTCCC--A 32999735 Query 9673 CATACC--ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | || ||| || | | ||| | ||||| ||||||||||| |||||||| || ||| Sbjct 32999736 CCTCCCATACCTGCTCCTCTCTGCCTCCCCACTGCATCAATCTCGTCAATGAACACAATG 32999795 Query 9731 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 9788 || || ||||| | || || || | ||||| || | | || ||||| | Sbjct 32999796 CACGG--CGCTTTCGACTTGGCCTTCTCGAACAAGTCCCGCACTCTCGACGCACCCACTC 32999853 Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9848 | ||||||| ||||| || | || || | || || || || || || || | Sbjct 32999854 CCACAAACAATTCCACGAACTCTGAAGCTGCGCAAGAGAAAAACGGCACCCCAGCCTCGC 32999913 Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 | || | ||| || || ||||| ||||| || ||||| || Sbjct 32999914 CGGCCACGGCCCGAGCCAGAAGGGTCTTGCCGGTACCAGG 32999953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259400174080