Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq6 87.8 1e-12 seq4 87.8 1e-12 >seq6 Length=30767194 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| || ||||| || || |||||| ||||| | || ||||| ||| || Sbjct 23848422 ATGCAGATTTTCGTCAAAACCCTAACCGGGAAAACAATTACTCTGGAGGTCGAGAGCTCC 23848481 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | || || || || || ||||| || ||| | || || | Sbjct 23848482 GATACCATTGATAAC--GTGAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCAGATC 23848539 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || ||||| || |||||||| |||| | | | | | ||||||| Sbjct 23848540 AGCAGAGGCTTATCTTCGCCGGTAAGCAATTGGAGGACGGTAGAACCCTTGCGGATTACA 23848599 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| |||||||| |||||| ||||| || | || || Sbjct 23848600 ACATCCAAAAGGAGTCAACTTTGCACTTGGTTCTGCGTCTGAGAGGTGG 23848648 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || ||||| || || ||||| || || | || ||||| ||| | Sbjct 23848194 ATGCAAATCTTCGTCAAAACCCTAACCGGGAAGACCATAACCCTAGAAGTCGAGAGCTCT 23848253 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || |||| || || || || ||||| || || | || || | Sbjct 23848254 GATACCATCGACAAC--GTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCAGACC 23848311 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| |||||||||||||| |||||||| |||| || | | | |||| |||| Sbjct 23848312 AGCAGAGGTTGATTTTTGCCGGAAAGCAATTGGAGGACGGCCGAACCCTCGCCGACTACA 23848371 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 |||||||||| || |||||||| |||||| Sbjct 23848372 ACATCCAAAAGGAATCGACTTTGCACTTGGTT 23848403 >seq4 Length=25843236 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || ||||||||||| || || | || || |||||| | Sbjct 12721434 ATGCAAATCTTTGTTAAGACCCTTACTGGGAAGACAATCACCTTGGAAGTTGAAAGCTCG 12721493 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| ||||| ||| || ||||| || || |||| || | Sbjct 12721494 GATACCATTGACAAT--GTCAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCAGACC 12721551 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || |||||||| || || | || || | ||||| | | | || || | Sbjct 12721552 AGCAGAGGCTCATCTTTGCCGGTAAGCAGCTTGAGGATGGACGCACCCTTGCTGACTATA 12721611 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| ||| |||||||||| | || ||||||| || Sbjct 12721612 ACATCCAAAAAGAATCGACTCTGCATTTGGTGCTCCGGCTGCGTGGTGG 12721660 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||||||||| || |||||| ||||| | || || |||||| | Sbjct 12721890 ATGCAGATATTTGTGAAAACTCTGACCGGGAAAACCATTACTCTGGAAGTGGAAAGCTCT 12721949 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || | ||| || || ||||| ||||| || ||| |||| || | Sbjct 12721950 GATACTATTGATAAT--GTTAAGGCCAAAATCCAGGACAAGGAGGGTATTCCCCCAGACC 12722007 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||| || || || | || || | | | | | | | || |||| Sbjct 12722008 AGCAGAGGTTGATCTTTGCAGGCAAGCAGCTCGAGGATGGAAGGACCCTTGCTGACTACA 12722067 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||| ||| |||| |||| ||||| | || ||||||| || Sbjct 12722068 ACATTCAAAAGGAGTCCACTCTGCACTTGGTGCTTCGACTGCGTGGTGG 12722116 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||||||| | |||||||| ||||| | || || |||||| | Sbjct 12761060 ATGCAAATCTTTGTGAAAACTTTGACTGGGAAGACGATTACTTTGGAAGTGGAAAGCTCA 12761001 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| || || ||||| ||||| || ||| | || || | Sbjct 12761000 GATACTATTGACAAT--GTGAAGGCCAAAATCCAGGACAAGGAGGGTATCCCTCCAGACC 12760943 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||| || || || |||| || | | | | | | |||| |||| Sbjct 12760942 AGCAGAGGTTGATATTTGCAGGCAAGCAGCTGGAGGATGGAAGGACCCTTGCCGACTACA 12760883 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || ||||| ||| || |||| ||||| | ||| ||||||| || Sbjct 12760882 ATATTCAAAAGGAGTCGACCCTGCACTTGGTGCTCCGTCTGCGTGGTGG 12760834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355861567281984