Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq4 102 7e-17 seq1 82.4 7e-11 >seq4 Length=25843236 Score = 102 bits (112), Expect = 7e-17 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || || |||||||| || ||||| || ||||| || ||| | || || Sbjct 12721643 CACCAAATGCAGAGTCGATTCTTTTTGGATGTTATAGTCAGCAAGGGTGCGTCCATCCTC 12721584 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| || || ||||| || || | ||||||||| | ||| | || ||| |||||| Sbjct 12721583 AAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTG 12721524 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGAC---TCCACGTCCACCGTGATACT 39251 ||| || |||| | | | ||||| ||| || || |||| ||||| | Sbjct 12721523 GATCTTTGCCTTGACATTGTCAATGGTATC---CGAGCTTTCAACTTCCAAGGTGATTGT 12721467 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || || ||||||||||||||||| Sbjct 12721466 CTTCCCAGTAAGGGTCTTAACAAAGATTTGCAT 12721434 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || || ||| || || || || || || || || || || |||| || Sbjct 1215056 CACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTACGGCCGTCCTC 1215115 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || || || || |||||||||||||| | || | || ||| |||||| Sbjct 1215116 TAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTG 1215175 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| ||| | | | || || |||||||| || | ||||| | | Sbjct 1215176 GATCTTAGCCTTGA-CGTTGTCGATGGTGTCAGATGACTCCACCTCAAGGGTGATGGTCT 1215234 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || || || ||||| || ||||||||||||| Sbjct 1215235 TGCCGGTAAGGGTTTTCACGAAGATTTGCATCT 1215267 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| ||| || || || || || |||||||| || || | || || Sbjct 12707658 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACCATCCTC 12707599 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| ||||| ||||| || || | ||||||||| | ||| | || ||| |||||| Sbjct 12707598 AAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTG 12707539 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGAC---TCCACGTCCACCGTGATACT 39251 ||| || |||| | | | ||||| ||| || || |||| ||||| | Sbjct 12707538 GATCTTTGCCTTGACATTGTCAATGGTATC---CGAGCTTTCAACTTCCAAGGTGATTGT 12707482 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || || || |||||||||||||| Sbjct 12707481 CTTCCCAGTAAGGGTCTTGACAAAGATTTGCAT 12707449 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| || || || || ||| ||||| ||||| ||||| || || || || | || || Sbjct 12761307 CACTAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCAGCTAGGGTGCGGCCATCCTC 12761366 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| || || ||||| || || | ||||||||| | || | || ||||||||| Sbjct 12761367 AAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGAATGCCCTCTTTGTCTTG 12761426 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || |||| | | | ||| ||| ||| || |||| ||||| | || Sbjct 12761427 GATCTTAGCCTTGACGTTATCAATCGTGTCGGAGCTCTCAACCTCCAAAGTGATGGTCTT 12761486 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| || || || || |||||||||||||| Sbjct 12761487 TCCGGTGAGAGTCTTGACAAAGATTTGCAT 12761516 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| ||| || || || || || |||||||| || || | || || Sbjct 12721415 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACCATCCTC 12721356 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| || || ||||| || || | ||||||||| | ||| | | ||| |||||| Sbjct 12721355 AAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTG 12721296 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGAC---TCCACGTCCACCGTGATACT 39251 ||| || |||| | | | ||||| ||| || || |||| ||||| | Sbjct 12721295 GATCTTTGCCTTGACATTGTCAATAGTATC---CGAGCTTTCAACTTCCAAGGTGATTGT 12721239 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || || || |||||||||||||| Sbjct 12721238 CTTCCCGGTAAGGGTCTTGACAAAGATTTGCAT 12721206 >seq1 Length=47851208 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || || || |||||||| || ||||| |||| || ||||| ||||| || || Sbjct 26252856 TCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 26252915 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || || ||||||||||| | ||| | || ||| ||||| ||| || || | | Sbjct 26252916 ATGAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTG 26252975 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | ||||| ||||| || || | || || | || ||||| || ||||| || Sbjct 26252976 TCGATGGTATCAGAGGACTCGACCTCTAGGGTAATGGTCTTACCCGTTAGGGTTTTCACG 26253035 Query 39274 AAGATTTGCATCTTTACG 39291 ||||| ||||| ||| || Sbjct 26253036 AAGATCTGCATGTTTGCG 26253053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429544594863296