Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq4 120 2e-22 seq2 104 2e-17 seq7 100 2e-16 seq6 95.1 8e-15 seq1 89.7 3e-13 >seq4 Length=25843236 Score = 120 bits (132), Expect = 2e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| |||||||||||||| || || ||||| ||||| ||||| | | Sbjct 12706993 ATGCAGATTTTCGTGAAAACCCTCACGGGCAAGACCATCACCCTCGAGGTTGAAAGCTCT 12707052 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | || || ||||| ||||| | || ||||| || Sbjct 12707053 GACACCATTGACAATGTCAAAGC-CAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCA 12707111 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || || || || | ||||| | | ||||||||| Sbjct 12707112 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCCGATTACAA 12707171 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 12707172 CATCCAGAAGGAGTCCAC 12707189 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||||||||| || || || ||||| ||||| ||||| | | Sbjct 12720978 ATGCAGATCTTCGTGAAAACCCTCACAGGCAAGACCATCACCCTCGAGGTTGAAAGCTCT 12721037 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | || ||| ||||| ||||| | || ||||| || Sbjct 12721038 GACACCATTGACAATGTCAAAGC-CAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCA 12721096 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || || || || | ||||| | | ||||||||| Sbjct 12721097 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCCGATTACAA 12721156 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 12721157 CATCCAGAAGGAGTCCAC 12721174 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| |||||||| || |||||||| || || || | || Sbjct 1214581 ATGCAGATTTTTGTGAAGACCCTGACGGGAAAGACCATCACTCTGGAGGTCGAGAGCTCG 1214522 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || || ||||| || ||| | || ||||| || Sbjct 1214521 GACACCATTGACAATGTCAAGGC-GAAGATCCAGGACAAGGAGGGTATCCCACCAGACCA 1214463 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | || || ||||| || || || ||||| || | || || | | || ||||| Sbjct 1214462 GCAAAGGTTGATCTTTGCAGGAAAGCAGCTGGAGGATGGCCGTACCCTTGCTGACTACAA 1214403 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || || |||||||| | ||||| || Sbjct 1214402 CATCCAGAAGGAGTCCACTCTCCATTTGGT 1214373 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| ||||| || ||||| ||||| ||||| | | Sbjct 12761744 ATGCAGATCTTTGTGAAAACCCTCACCGGAAAGACCATCACCCTCGAGGTTGAAAGCTCT 12761685 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | || || ||||| || ||| | || ||||| || Sbjct 12761684 GACACGATCGACAATGTCAAAGC-CAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCA 12761626 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || || ||||| || || || || | ||||| | | || ||||| Sbjct 12761625 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACCCTCGCTGACTACAA 12761566 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 12761565 CATCCAGAAGGAGTCCAC 12761548 >seq2 Length=30405870 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| ||| |||| || ||||| || || |||||||| || ||||| | Sbjct 22653460 AATGCAGATTTTTGTTGAAACTCTGACGGGGAAGACAATCACTCTTGATGTTGAGGGTTC 22653401 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || |||| ||| | ||| | ||||| |||||||| ||| | || || |||| Sbjct 22653400 CGATACAATTGACAATGTGAAAGC-TAAAATCCAAGACAAAGAGGGTATCCCTCCGGATC 22653342 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || ||||| || || ||||| || |||| ||| || | | ||||| | Sbjct 22653341 AGCAGAGGCTCATTTTTGCTGGGAAGCAACTTGAGGACGGACGTACCCTGGCTGATTATA 22653282 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || |||||||| || Sbjct 22653281 ACATCCAGAAAGAGTCTAC 22653263 >seq7 Length=22388614 Score = 100 bits (110), Expect = 2e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||| || || || || ||||||||||| || || | Sbjct 13231604 AAGATGCAGATTTTCGTGAAAACCCTAACCGGGAAGACCATCACTCTCGAGGTCGAGAGC 13231663 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || || ||||| || || | || ||||| Sbjct 13231664 AGCGACACCATCGACAATGTCAAGGC-CAAGATCCAAGACAAGGAGGGAATTCCACCAGA 13231722 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || |||||||| || ||||| ||||| || || ||||| | ||||| || | || || Sbjct 13231723 CCAGCAGCGTTTGATTTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCTTGGCTGACTA 13231782 Query 23787 CAACATACAAAAAG 23800 ||||| || |||| Sbjct 13231783 TAACATCCAGAAAG 13231796 >seq6 Length=30767194 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| |||||||| || || ||||| || ||||| || || || | | Sbjct 23848422 ATGCAGATTTTCGTCAAAACCCTAACCGGGAAAACAATTACTCTGGAGGTCGAGAGCTCC 23848481 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || || || ||||| || ||| | || |||||||| Sbjct 23848482 GATACCATTGATAACGTGAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCAGATCAG 23848541 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || ||||| || ||| |||| |||| | || | | ||||||||| Sbjct 23848542 CAGAGGCTTATCTTCGCCGGTAAGCAATTGGAGGACGGTAGAACCCTTGCGGATTACAAC 23848601 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || ||||| ||||| || || || || ||| Sbjct 23848602 ATCCAAAAGGAGTCAACTTTGCACTTGGTT 23848631 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| || || || || || ||||| || ||||| | | Sbjct 23848878 ATGCAGATTTTTGTGAAGACCCTGACTGGGAAGACCATTACTCTGGAGGTTGAGAGCTCT 23848937 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | ||| | || ||| ||||| || || | || || || || Sbjct 23848938 GACACTATTGACAATGTCAAAGC-TAAGATTCAAGACAAGGAGGGGATCCCACCGGACCA 23848996 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| ||||| || || || | || || | | ||||| || Sbjct 23848997 GCAGAGGTTGATCTTTGCCGGGAAACAGCTTGAGGATGGTCGTACCCTTGCAGATTATAA 23849056 Query 23790 CATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 23849057 TATCCAGAAAGAGTCTAC 23849074 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || || ||| | || || || | | Sbjct 23848650 ATGCAGATATTCGTGAAGACCCTTACAGGGAAGACAATAACTTTGGAGGTCGAGAGCTCT 23848709 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || | || ||||| ||||| | || |||||||| Sbjct 23848710 GATACGATTGACAATGTGAAGGCGAAGA-TTCAGGACAAGGAAGGCATTCCTCCAGATCA 23848768 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || ||| |||| || | | | ||| | | |||||||| Sbjct 23848769 GCAGAGGCTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACTCTGGCGGATTACAA 23848828 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 23848829 CATCCAGAAAGAGTCGAC 23848846 >seq1 Length=47851208 Score = 89.7 bits (98), Expect = 3e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| |||||||| ||||| || || || || || || || || ||| Sbjct 26253049 AACATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATTACCCTAGAGGTCGAGTCC 26252990 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || | || ||| | || | || | | ||||| || || | || ||||| Sbjct 26252989 TCTGATACCATCGACAATGTGAAGGCCAAGA-TCCAAGACAAGGAGGGCATTCCCCCAGA 26252931 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||||| | || || |||||||| || || || |||| || || ||| |||||| Sbjct 26252930 CCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTAGCCGATTA 26252871 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || || || || Sbjct 26252870 CAACATCCAGAAGGAATCGAC 26252850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008809057536