Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq4399 131 4e-25 seq3433 118 2e-21 seq1774 107 4e-18 seq4810 104 5e-17 seq4609 104 5e-17 seq4293 104 5e-17 seq1935 104 5e-17 seq813 104 5e-17 seq797 104 5e-17 seq3224 98.7 2e-15 >seq4399 Length=3202280 Score = 131 bits (144), Expect = 4e-25 Identities = 290/431 (67%), Gaps = 3/431 (1%) Strand=Plus/Minus Query 230200 TGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAA 230259 || || || || || | || |||||||| ||||| |||||||| |||||| ||| Sbjct 384175 TGCGTGGAGGGGATCTTCTTCTCCGGGAGCTTCTGTGCCATCTTCTGGCTGAAGAAGCGG 384116 Query 230260 GGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCAT 230319 || ||||||| || ||| | || |||||| | ||| | |||||||| ||||| Sbjct 384115 GGGCTGATGCCGGGGCTCACCTTCTCGAACGAGCTGATCTCGAGGGACGAGGGACTCCAC 384056 Query 230320 CAACAGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAGACGGTC 230379 | |||| | || || || || |||| | ||||| |||| || Sbjct 384055 TGCGACTTCGCCTGCCTGATCTACTCCCTCCTCCGGTCGAAGCTCAGCGAGGAGAAAGTG 383996 Query 230380 AAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCA 230439 || || | || || || || | ||| | |||||| | || ||||| | || Sbjct 383995 AAGTCGATAGTGCGGGACGCGGTGGAGATCGAGAGGGAGTTTGTATGCGACGCGCTGCCG 383936 Query 230440 TGTCGC-CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGA 230498 || ||| || | || ||||||| || || ||||| |||||||| || ||||| || || Sbjct 383935 TG-CGCGCTGGTGGGGATGAACGGCGACCTCATGGGGCAGTACATAGAGTTCGTGGCGGA 383877 Query 230499 CCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATT 230558 ||| | | || || | || | || ||| |||||| || | |||||||| | | Sbjct 383876 CCGGCTGCTGGTGGCGTTGGGCTGCGGGAAGGTGTACGACGCGGCCAACCCCTTCGACTG 383817 Query 230559 TATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTA 230618 |||||||| || ||||| ||||||||||||||||||||||| ||| | ||| | || || Sbjct 383816 GATGGAGCTGATATCGCTGCAAGGGAAGACCAACTTCTTCGAGAAGAGGGTCGGGGAGTA 383757 Query 230619 TCAG-AGGCCT 230628 ||| |||||| Sbjct 383756 CCAGAAGGCCT 383746 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/190 (72%), Gaps = 11/190 (6%) Strand=Plus/Minus Query 229753 TCTGC--GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAA 229810 ||||| |||||||||| | |||||||| ||||||| |||||||||||||||| ||| Sbjct 384621 TCTGCATGTTCCCAATCAAGTATCCCGAGGTGTGGGAAATGTACAAGAAGGCGGAGGCCT 384562 Query 229811 CTTTCTGGACCACTGAGGAAGT--TCCTCTGAACGCA-GACGTCGTCGACTGGCGTGAGA 229867 | |||||||| | ||||| || ||||| | || ||| | | ||||| |||| Sbjct 384561 CCTTCTGGACGGCGGAGGAGGTGGACCTCT---CCCAGGACACCCGCCACTGG---GAGA 384508 Query 229868 AACTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCG 229927 | || | || ||| || |||||| ||| || ||||| | ||| ||||| | ||| | Sbjct 384507 ATCTAACCTCCGGCGAGCGCCATTTCGTCACCCATATCCTCGCTTTCTTCGCCGCCTCTG 384448 Query 229928 ATGGTATTGT 229937 | || || || Sbjct 384447 ACGGGATCGT 384438 >seq3433 Length=1155350 Score = 118 bits (130), Expect = 2e-21 Identities = 74/80 (93%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 165702 AAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGG 165761 ||||||||||||||||||||||||||||||||||| || || |||| || |||||||||| Sbjct 1005573 AAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGG 1005514 Query 165762 GTTCGAGCCCCACGATGGGC 165781 |||||||||||||| ||||| Sbjct 1005513 GTTCGAGCCCCACGGTGGGC 1005494 Score = 109 bits (120), Expect = 1e-18 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 165702 AAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGG 165761 ||| | ||||||||||||||||||||||||||||| || || |||| || |||||||||| Sbjct 1000710 AAAGGATTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGG 1000651 Query 165762 GTTCGAGCCCCACGATGGGC 165781 |||||||||||||| ||||| Sbjct 1000650 GTTCGAGCCCCACGGTGGGC 1000631 >seq1774 Length=634465 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||||||||||||||||| || |||| || |||||||||||||||||| Sbjct 252097 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 252038 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 252037 CCCACGGTGGGC 252026 >seq4810 Length=5543293 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 3278465 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3278406 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3278405 CCCACGGTGGGC 3278394 >seq4609 Length=2952995 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 1132937 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1132878 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1132877 CCCACGGTGGGC 1132866 >seq4293 Length=5823730 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 655651 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 655592 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 655591 CCCACGGTGGGC 655580 >seq1935 Length=2038111 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 356868 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 356809 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 356808 CCCACGGTGGGC 356797 >seq813 Length=2976281 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 1581282 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1581223 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1581222 CCCACGGTGGGC 1581211 >seq797 Length=2373938 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 1870387 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1870328 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1870327 CCCACGGTGGGC 1870316 >seq3224 Length=4215183 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| | |||||||||||||||||| Sbjct 3393907 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACATTGTGGTCGTGGGTTCGAGC 3393848 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3393847 CCCACGGTGGGC 3393836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057588103595150