Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq281 91.5 2e-13 >seq281 Length=1258992 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 ||| || ||||| | || | ||| || | ||| | || | | |||||||| ||| || Sbjct 239860 TCCCCCTTGATCAACATAACGAGCAGTATCATTGAAGACACGTAGCATTGGAACAATGCC 239919 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 ||| |||| ||||| ||||| |||||| || ||| | |||||||||||| || ||| Sbjct 239920 ATTAGATGTGCCATTTGTCCCTCTGATATAACTACCAGTTGCACGAATATTATGAACTGA 239979 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 || || ||||| || || ||| ||| | || || || ||||||||||| || Sbjct 239980 TACCCCAATCCCTCCAGCTGATTTGCTGATGACAGCACACTCCTTCAACGTATCATAAAT 240039 Query 54364 GCCCTCTATACTATCATCCATCATG 54388 || || || || || || ||||| Sbjct 240040 TCCTTCAATGCTGTCCTCTTTCATG 240064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593592428444400