Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1810 114 2e-20 seq2011 84.2 3e-11 >seq1810 Length=4673341 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | ||||| || || ||||| || || || | ||| ||||| Sbjct 4157877 AATGCAGATTTTCGTGAAGACCCTCACTGGCAAGACGATTACCCTGGAGGTTGAAAGCTC 4157818 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| |||| | || ||||| || ||||| ||||| || || || || || Sbjct 4157817 GGATACGATTGATAATGTCAAGACCAAAATCCAGGATAAGGAAGGGATTCCCCCGGACCA 4157758 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||| ||||| || || || | || ||| | || ||| | | || ||||| Sbjct 4157757 GCAGAGGCTTATCTTTGCTGGGAAGCAGCTTGAAGATGGGCGTACACTGGCCGACTATAA 4157698 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||||||| || | || |||||| | ||| | ||||||| || Sbjct 4157697 TATTCAAAAAGAATCCACCCTACACTTGGTTCTCCGTCTCAGAGGTGGAAT 4157647 Score = 104 bits (114), Expect = 4e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || || || || ||||| || || || | ||| | ||| Sbjct 4157421 AATGCAAATTTTTGTGAAAACCCTCACGGGCAAGACAATTACCCTGGAGGTCGAAAGTTC 4157362 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| |||| | || |||||| || || || ||||| || || || || || Sbjct 4157361 GGACACGATTGATAATGTGAAGACGAAAATCCAGGACAAGGAAGGAATCCCTCCGGACCA 4157302 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| |||||||||||||| || || || | |||||| | ||||| | | ||| || || Sbjct 4157301 ACAGAGGCTTATTTTTGCTGGGAAGCAGCTCGAGGATGGGCGAACTCTTGCAGACTACAA 4157242 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 ||| || || ||||| || | |||||||| Sbjct 4157241 TATCCAGAAGGAATCGACCCTTCATTTGGT 4157212 >seq2011 Length=5003947 Score = 84.2 bits (92), Expect = 3e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || | ||||| ||||| ||||| || || || | ||| | || ||| Sbjct 3037130 ATGCAGATCTTCGTGAAGACTCTAACCGGCAAGACGATCACGTTGGAGGTCGAGAGCTC- 3037072 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| || | || || ||||||||||| || ||||| || || ||||| Sbjct 3037071 TGACACGATTGACAACGTGAAGGCCAAGATTCAAGATAAGGAGGGTATTCCTCCGGATCA 3037012 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||| || ||||| ||||| || | || ||| | | || | | |||||||| Sbjct 3037011 GCAGCGGCTGATCTTTGCCGGAAAGCAGCTCGATGATGGCAGGACCCTGGCGGATTATAA 3036952 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 ||| || || || || || |||||||||| Sbjct 3036951 TATCCAGAAGGAGTCGACCCTGCATTTGGT 3036922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755291641104000