Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq5369 89.7 4e-13 seq1810 84.2 2e-11 >seq5369 Length=1591519 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| |||||| || || || |||||||||||||||||||| | || ||| ||| Sbjct 1427020 AGGACCAGGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGCAAGGGTCCTACCATCC 1427079 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | || ||||| ||| |||||||||| || || ||| || | || ||||| || Sbjct 1427080 TCAAGCTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCCGGTGGGATCCCCTCCTTGTCC 1427139 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||||| |||||| | ||| ||||| | ||| || | |||||| | Sbjct 1427140 TGAATTTTCGCCTTGACATTGTCAATGGTGTCCGAGCTCTCAACCTCCAGGGTGATTGTC 1427199 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || |||| || || ||||| || ||||| Sbjct 1427200 TTCCCTGTCAGGGTCTTAACAAAGATCTGCAT 1427231 >seq1810 Length=4673341 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || |||||||||||||| || |||||||||| ||| | |||| Sbjct 4157665 AGAACCAAGTGTAGGGTGGATTCTTTTTGAATATTATAGTCGGCCAGTGTACGCCCATCT 4157724 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 || | || || || ||| ||||||| || || || ||| ||| | ||||||||||| Sbjct 4157725 TCAAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCCGGGGGAATCCCTTCCTTATC 4157783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379263532246725