Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq5369 105 6e-18 seq1932 95.1 1e-14 seq1810 95.1 1e-14 seq4810 91.5 1e-13 seq3224 91.5 1e-13 seq2214 91.5 1e-13 seq6319 89.7 5e-13 seq2370 89.7 5e-13 seq2011 86.0 6e-12 seq790 86.0 6e-12 >seq5369 Length=1591519 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| |||||||| || || |||||| | || ||||| || Sbjct 1427232 CATGCAGATCTTTGTTAAGACCCTGACAGGGAAGACAATCACCCTGGAGGTTGAGAGCTC 1427173 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || ||| ||||||||| || | || || ||||| Sbjct 1427172 GGACACCATTGACAATGTCAAGGCGAAAATTCAGGACAAGGAGGGGATCCCACCGGACCA 1427113 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || ||||| ||| | || || || ||| | ||| || || Sbjct 1427112 GCAGAGACTTATCTTTGCCGGCAAGCAGCTTGAGGATGGTAGGACCCTTGCCGACTACAA 1427053 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||||||| || || |||||||| ||||| || Sbjct 1427052 CATTCAAAAGGAGTCCACTCTTCACCTGGTCCT 1427020 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||||||||| || || || || || || ||| | || ||||| ||| Sbjct 1427915 ATGCAAATCTTCGTAAAGACCCTTACTGGTAAGACCATTACCCTTGAGGTTGAGAGCTCC 1427856 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || ||||||||| || | || || |||||| Sbjct 1427855 GACACCATCGATAATGTAAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAG 1427796 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || ||||| || ||| | ||||| || || |||||||||| Sbjct 1427795 CAGAGGCTCATCTTTGCTGGTAAGCAGCTCGAAGATGGCCGCACCTTGGCCGATTATAAC 1427736 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || ||||| || || || || ||||| || | ||||||| || Sbjct 1427735 ATCCAGAAAGAGTCCACACTCCACCTGGTCCTCCGGTTGAGGGGTGG 1427689 >seq1932 Length=4064500 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || || || ||||| || ||||| |||| || || ||| Sbjct 3415262 ATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACTATCACGCTCGAGGTCGAGAGCTCC 3415203 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||| || | ||||| |||||| Sbjct 3415202 GACACGATCGATAACGTCAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCGGACCAG 3415143 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| || || ||| | || ||| ||| | ||| |||||| Sbjct 3415142 CAGCGGCTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGGACCCTCGCCGACTATAAC 3415083 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || || || || || || || || || || ||||| || Sbjct 3415082 ATCCAGAAGGAGTCAACCCTCCACCTTGTGCTCAGGCTCAGGGGAGG 3415036 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || || || ||||| |||| || || ||| Sbjct 3414806 ATGCAGATCTTCGTGAAGACCCTTACCGGGAAGACCATCACGCTCGAGGTGGAGAGCTCC 3414747 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| || || ||||||||||||| | || || |||||| Sbjct 3414746 GACACGATTGACAATGTCAAGGCGAAGATCCAGGACAAGGAAGGCATTCCCCCGGACCAG 3414687 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || |||||||| || || ||| | || || || | || |||||| Sbjct 3414686 CAGAGGCTGATATTCGCCGGGAAGCAGCTCGAGGATGGCCGCACACTCGCGGACTATAAC 3414627 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || ||||| || || || || || || |||||||| || Sbjct 3414626 ATCCAGAAGGAGTCGACCCTCCACCTCGTGCTCAGGCTGAGGGGAGG 3414580 >seq1810 Length=4673341 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || ||||| ||||| ||| | || |||||| || Sbjct 4157876 ATGCAGATTTTCGTGAAGACCCTCACTGGCAAGACGATTACCCTGGAGGTTGAAAGCTCG 4157817 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | ||||| | ||| ||| |||||||| | || || |||||| Sbjct 4157816 GATACGATTGATAATGTCAAGACCAAAATCCAGGATAAGGAAGGGATTCCCCCGGACCAG 4157757 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || ||||| || ||| | ||||| || || ||| ||||| Sbjct 4157756 CAGAGGCTTATCTTTGCTGGGAAGCAGCTTGAAGATGGGCGTACACTGGCCGACTATAAT 4157697 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||||||||| || || || |||| || Sbjct 4157696 ATTCAAAAAGAATCCACCCTACACTTGGTTCT 4157665 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || || || || ||||| | || |||||| ||| Sbjct 4156964 ATGCAGATCTTTGTCAAGACGCTTACTGGAAAGACCATCACGTTGGAGGTTGAAAGCTCC 4156905 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | ||||| ||| ||| | ||||||||| || | || || ||||| Sbjct 4156904 GATACCATTGATAATGTCAAGACAAAGATTCA-GGACAAGGAGGGAATCCCCCCTGACCA 4156846 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | || || || ||||| |||||| |||| || ||| || |||||||| Sbjct 4156845 GCAAAGGCTGATCTTTGCTGGGAAACAGCTGGAGGATGGCCGAACTTTGGCAGATTATAA 4156786 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| |||||||| |||||||| || || || || Sbjct 4156785 CATCCAAAAAGAGTCGACTCTCCACCTTGTCCT 4156753 >seq4810 Length=5543293 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || ||||| |||| || || ||| Sbjct 517765 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGAGCTCC 517824 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||||||| | ||||| |||||| Sbjct 517825 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCGCCGGACCAG 517884 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||| | || || ||||||||||| ||| | || || Sbjct 517885 CAGAGGCTGATCTTCGCTGGCAAGCAGCTCGAGGA 517919 >seq3224 Length=4215183 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 31185 AATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTG 31244 || |||| ||||| || ||||| ||||| || || || || ||||| ||| |||| |||| Sbjct 2572945 AAGCAAAGATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACGATAACCCTCGAGGTTG 2572886 Query 31245 AACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGC 31304 | | ||||| |||| | || || || || ||||||||| || | || | Sbjct 2572885 AGTCCAGCGACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCCC 2572826 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCG 31364 | ||||||||||| || || || || ||||| ||| |||| ||| || | || Sbjct 2572825 CGGACCAGCAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACACTCGCCG 2572766 Query 31365 ATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | || ||||| || || || ||||| || || || || || | || ||||||| Sbjct 2572765 ACTACAACATCCAGAAGGAGTCGACGCTCCACCTCGTGCTCCGGCTCCGGGGCGG 2572711 >seq2214 Length=9977371 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 |||||||||||| | || || ||||||||| | || ||||| ||||| || || ||||| Sbjct 3956288 GGACAAGGAAGGTATCCCACCGGACCAGCAGAGACTGATATTTGCTGGAAAGCAATTGGA 3956347 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| |||| | ||||| ||||| || || || |||||||||||||| || || Sbjct 3956348 AGATGGCCGGACTCTTGCGGATTACAACATCCAGAAGGAGTCGACTCTTCATCTTGTCCT 3956407 Query 31405 TAGACTGAGGGGCGG 31419 || || ||||| || Sbjct 3956408 GAGGCTCAGGGGAGG 3956422 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 31185 AATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTG 31244 || |||| ||||| || ||||| ||||| || || || || ||||| ||| |||| |||| Sbjct 6800633 AAGCAAAGATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACGATAACCCTCGAGGTTG 6800574 Query 31245 AACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGC 31304 | | ||||| |||| | || || || || ||||||||| || | || | Sbjct 6800573 AGTCCAGCGACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCCC 6800514 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCG 31364 | ||||||||||| || || || || ||||| ||| |||| ||| || | || Sbjct 6800513 CGGACCAGCAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACACTCGCCG 6800454 Query 31365 ATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | || ||||| || || || ||||| || || || || || | || ||||||| Sbjct 6800453 ACTACAACATCCAGAAGGAGTCGACGCTCCACCTCGTGCTCCGGCTCCGGGGCGG 6800399 >seq6319 Length=5966559 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || || ||||| ||| |||| || || | | Sbjct 2708661 ATGCAGATCTTCGTGAAGACCCTAACGGGGAAGACGATAACCCTCGAGGTCGAGTCCAGC 2708720 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || ||| ||||| ||| | ||||| |||||| Sbjct 2708721 GACACGATCGACAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCGCCGGACCAG 2708780 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| || || ||| | || ||| ||| | ||| || ||| Sbjct 2708781 CAGCGGCTCATCTTCGCCGGGAAGCAGCTTGAGGACGGCCGGACCCTCGCCGACTACAAC 2708840 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || ||||| || || ||||| || |||| ||||||| Sbjct 2708841 ATCCAGAAGGAGTCGACGCTCCACCTGGTCCTCCGACTCCGGGGCGG 2708887 >seq2370 Length=1017971 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| ||||| || || ||||||||| |||| || || || Sbjct 237396 AAGATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACCCTCGAGGTGGAGTCG 237455 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | ||||| | || ||||||||| || | ||||| ||| Sbjct 237456 TCGGACACGATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGAATCCCGCCGGAC 237515 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACA 31338 |||||||| || || ||||| || || || Sbjct 237516 CAGCAGCGCCTGATCTTCGCCGGGAAGCA 237544 >seq2011 Length=5003947 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || ||||| || ||||| |||| || || Sbjct 3037817 AATATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGAGC 3037758 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||| | |||| | ||||| | || |||||||||||| | ||||| ||| Sbjct 3037757 TCCGATACGATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAAGGGATCCCGCCGGAC 3037698 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| | || ||||| || || ||| | || ||| ||| || ||| || Sbjct 3037697 CAGCAGCGCTTGATCTTCGCCGGGAAGCAGCTTGAGGACGGCCGGACATTGGCCGACTAC 3037638 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || || || || || || || || || | |||||||| || Sbjct 3037637 AACATCCAGAAGGAGTCCACCCTGCACCTCGTCCTCCGGCTGAGGGGAGG 3037588 >seq790 Length=1848252 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| ||||| || || || |||||| | || || || ||| Sbjct 1587774 ATGCAGATTTTTGTGAAGACCCTGACCGGGAAGACCATCACCCTTGAGGTGGAGAGCTCC 1587833 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||| |||||||| | || || |||||| Sbjct 1587834 GACACCATAGACAATGTCAAGGCCAAGATCCAGGATAAGGAAGGTATTCCCCCAGACCAG 1587893 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||| || || ||| | || || | ||| | ||||||||| Sbjct 1587894 CAGAGGCTCATCTTCGCAGGGAAGCAGCTCGAGGATGGGAGGACCCTCGCAGATTATAAC 1587953 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || || || ||||| ||||| || | ||||||| || Sbjct 1587954 ATCCAGAAGGAGTCCACCCTTCACCTGGTCCTCCGCTTGAGGGGAGG 1588000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445669417947600