Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq5369 107 2e-18 seq1810 89.7 5e-13 seq790 89.7 5e-13 seq2011 82.4 8e-11 >seq5369 Length=1591519 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || |||||||||||| || |||| ||||||||||| |||||| Sbjct 1427719 GTGGACTCTTTCTGGATGTTATAATCGGCCAAGGTGCGGCCATCTTCGAGCTGCTTACCA 1427778 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| || || || || || || ||||| ||| || ||| Sbjct 1427779 GCAAAGATGAGCCTCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTT 1427838 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| | ||| ||||||| ||| | ||||| || || | || Sbjct 1427839 ACATTATCGATGGTGTCGGAGCTCTCAACCTCAAGGGTAATGGTCTTACCAGTAAGGGTC 1427898 Query 139748 TTTACGAATATTTGCAT 139764 |||||||| |||||||| Sbjct 1427899 TTTACGAAGATTTGCAT 1427915 >seq1810 Length=4673341 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | ||| ||||| | || || ||||||||||| ||||| ||| | Sbjct 4157650 CCACCTCTGAGACGGAGAACCAAGTGTAGGGTGGATTCTTTTTGAATATTATAGTCGGCC 4157709 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | | ||||| ||||| || |||||| |||| || | ||||| || || || Sbjct 4157710 AGTGTACGCCCATCTTCAAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCCGGGGGA 4157769 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| || || |||||| || | | || | || || | | || ||| Sbjct 4157770 ATCCCTTCCTTATCCTGGATTTTGGTCTTGACATTATCAATCGTATCCGAGCTTTCAACC 4157829 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||||||| || | || || ||||| || ||||| Sbjct 4157830 TCCAGGGTAATCGTCTTGCCAGTGAGGGTCTTCACGAAAATCTGCAT 4157876 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || || ||||| || ||||||||||| | || ||| || ||| Sbjct 4157896 ACCAAGTGGAGGGTGGATTCTTTCTGGATGTTATAATCAGCAAGGGTCCTCCCATCCTCG 4157955 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || |||||| |||| || | ||||| || || || || ||||| || || | Sbjct 4157956 AGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATTCCTTCCTTATCCTGG 4158015 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 |||||| || | | || | |||||| | | || ||||||| ||| | ||||| Sbjct 4158016 ATTTTTGTCTTCACATTGTCAATTGTGTCTGAGCTTTCGACCTCAAGGGTAATGGTCTTT 4158075 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | || || || || |||||||| Sbjct 4158076 CCAGTGAGGGTCTTAACAAAGATTTGCAT 4158104 >seq790 Length=1848252 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||| | ||| ||||| || || || || || || || |||| ||||| ||||| Sbjct 1587293 GTGGAGCGTGGACTCCTTCTGGATATTGTAGTCAGCCAAGGTGCGGCCATCTTCAAGCTG 1587234 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 |||||||| |||| || | ||||| || || || || || || ||||| ||| || Sbjct 1587233 CTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATCTT 1587174 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 |||| | || | |||||||| | ||| ||||||| ||| | ||||||||||| Sbjct 1587173 GGACTTTACATTATCGATTGTGTCGGAGCTCTCGACCTCAAGGGTGATGGTCTTGCCGGT 1587114 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | || || ||||| |||||||| Sbjct 1587113 AAGGGTCTTAACGAAGATTTGCAT 1587090 >seq2011 Length=5003947 Score = 82.4 bits (90), Expect = 8e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || || |||||||| || || || || |||||||| || || Sbjct 3036934 GTCGACTCCTTCTGGATATTATAATCCGCCAGGGTCCTGCCATCATCGAGCTGCTTTCCG 3036993 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| || |||||||| ||||| || || || || || ||| | || | || Sbjct 3036994 GCAAAGATCAGCCGCTGCTGATCCGGAGGAATACCCTCCTTATCT-TGAATCTTGGCCTT 3037052 Query 139688 AGCTGTTCCACT-GTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| | | ||| ||||| | || | |||||||||||| | || Sbjct 3037053 CACGTTGTCAATCGTGTCAGAGCTCTCGACCTCCAACGTGATCGTCTTGCCGGTTAGAGT 3037112 Query 139747 TTTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 3037113 CTTCACGAAGATCTGCATA 3037131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495956075076000