Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq5369 98.7 7e-16 seq1810 95.1 9e-15 >seq5369 Length=1591519 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || |||||||| || || || ||||| || || ||| |||| |||| || Sbjct 1427479 ACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCAGCAAGAGTTCTTCCGTCCTCG 1427538 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| || ||||| | ||||| | || ||||| || |||||||| ||||| | Sbjct 1427539 AGTTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCCGGGGGGATTCCTTCCTTGTCTTGA 1427598 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | || || ||||| | ||||| || | || ||||| ||| Sbjct 1427599 ATCTTGGCCTTAACATTGTCAATTGTATCAGAGCTCTCTACCTCGAGCGTGATGGTCTTA 1427658 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || |||||||||||||| Sbjct 1427659 CCGGTGAGGGTCTTCACAAAAATTTGCAT 1427687 >seq1810 Length=4673341 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| | | || ||||||||||| || || || || || ||||| || Sbjct 4157194 CCTCCTCTCAGCCGAAGCACCAAATGAAGGGTCGATTCCTTCTGGATATTGTAGTCTGCA 4157253 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| ||| | | || || | || || ||||| | || | | |||||||| || Sbjct 4157254 AGAGTTCGCCCATCCTCGAGCTGCTTCCCAGCAAAAATAAGCCTCTGTTGGTCCGGAGGG 4157313 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| ||||| |||| ||| | || || || || | |||| || Sbjct 4157314 ATTCCTTCCTTGTCCTGGATTTTCGTCTTCACATTATCAATCGTGTCCGAACTTTCGACC 4157373 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | |||||| || || || || || ||||| |||||||||||||| Sbjct 4157374 TCCAGGGTAATTGTCTTGCCCGTGAGGGTTTTCACAAAAATTTGCAT 4157420 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | | | ||||| || |||||||| || || || ||||||||||| Sbjct 4157422 CCACCTCTGAGGCGGAGGACTAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAATCAGCA 4157481 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | ||| | || || | || || ||||| |||| | | || ||||| ||| Sbjct 4157482 AGGGTCCTCCCATCCTCCAGCTGCTTCCCAGCAAATATGAGCCTCTGCTGGTCCGGGGGA 4157541 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| || || |||||| |||| ||| | || || || || |||| || Sbjct 4157542 ATCCCTTCCTTATCCTGGATTTTGGTCTTCACATTATCAATCGTGTCCGAGCTTTCGACC 4157601 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||||||||| || || || || || || || ||||| ||||| Sbjct 4157602 TCCAAGGTAATGGTCTTGCCAGTAAGGGTCTTCACGAAAATCTGCAT 4157648 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 |||||||| || || |||||||||||||| ||| || | ||| | || || | || Sbjct 4156990 TGAAGGGTCGATTCCTTTTGTATGTTGTAGTCGGCGAGGGTCCTCCCATCCTCAAGCTGC 4157049 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| || | |||| | || ||||| || || ||||| ||||| ||| ||| Sbjct 4157050 TTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATCCCTTCCTTGTCCTGAATCTTG 4157109 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 | || ||| | |||||||| || | || || || | || ||||||||||| || Sbjct 4157110 GTTTTCACATTATCTATGGTGTCCGAGCTCTCCACCTCAAGAGTGATGGTTTTACCAGTA 4157169 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || ||||| Sbjct 4157170 AGGGTCTTCACAAAGATCTGCAT 4157192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362102373303105