Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20]
17,405 sequences; 296,383,220 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq5369 84.2 2e-11
>seq5369
Length=1591519
Score = 84.2 bits (92), Expect = 2e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874
||||||| ||| | | |||| ||| | || |||||||||||||| ||||| || ||
Sbjct 1427005 CCTCCTCTCAAACGGAGGACCAGGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGCA 1427064
Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934
| || | | ||||| ||||| || || ||| | |||||||||||||| ||| ||
Sbjct 1427065 AGGGTCCTACCATCCTCAAGCTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCCGGTGGG 1427124
Query 18935 ACGCCCTCTTTGTCGGCAATTTTC 18958
| ||||| ||||| |||||||
Sbjct 1427125 ATCCCCTCCTTGTCCTGAATTTTC 1427148
Score = 82.4 bits (90), Expect = 6e-11
Identities = 159/232 (69%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872
||||||| |||| | | ||||| ||| | || |||||||| ||||| || || || |
Sbjct 1427459 TTCCTCCCCGCAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCAG 1427518
Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932
| | ||| | ||||||| || || || || ||| |||| | |||||||| ||| ||
Sbjct 1427519 CAAGAGTTCTTCCGTCCTCGAGTTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCCGGGG 1427578
Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCC 18991
| | || || ||||| ||| || || || | | | | ||||| || ||||
Sbjct 1427579 GGATTCCTTCCTTGTCTTGAATCTTGGCCTTAACATTGTCAATTGTATC---AGAGCTCT 1427635
Query 18992 GTT--TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
| |||| || ||||| ||||| || | || || ||||||||||||||
Sbjct 1427636 CTACCTCGAGCGTGATGGTCTTACCGGTGAGGGTCTTCACAAAAATTTGCAT 1427687
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414484859392570
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |