Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1810 87.8 1e-12 seq2011 86.0 4e-12 >seq1810 Length=4673341 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| ||||| ||| ||||||||||||||||| ||| | | |||| |||| || Sbjct 4157668 ACCAAGTGTAGGGTGGATTCTTTTTGAATATTATAGTCGGCCAGTGTACGCCCATCTTCA 4157727 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTAT-CTGA 44031 | || || || ||||| || | || ||||||||| | || | ||||| |||| ||| Sbjct 4157728 AGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCCGGGGGAATCCCTTCCTTATCCTGG 4157787 Query 44032 AATTTTTTGT-TTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090 | |||| || ||||| || ||| ||||| | || || || | ||||| || | Sbjct 4157788 A--TTTTGGTCTTGACATTATCAATCGTATCCGAGCTTTCAACCTCCAGGGTAATCGTCT 4157845 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || || | |||||||| || || ||||| Sbjct 4157846 TGCCAGTGAGGGTCTTCACGAAAATCTGCAT 4157876 >seq2011 Length=5003947 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| | || | ||||||||| || || ||| || || ||||||||||| Sbjct 3036904 CCTCCTCTGAGCCTCAGCACCAAATGCAGGGTCGACTCCTTCTGGATATTATAATCCGCC 3036963 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | |||| || | || ||||| ||||| |||| ||| ||||| ||| |||| Sbjct 3036964 AGGGTCCTGCCATCATCGAGCTGCTTTCCGGCAAAGATCAGCCGCTGCTGATCCGGAGGA 3037023 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||| || |||||| ||| || || || | ||| || || | ||| || Sbjct 3037024 ATACCCTCCTTATCTTGAATCTTGGCCTTCACGTTGTCAATCGTGTCAGAGCTCTCGACC 3037083 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||| || || || ||||||| ||||||||| || || ||||| Sbjct 3037084 TCCAACGTGATCGTCTTGCCGGTTAGAGTCTTCACGAAGATCTGCAT 3037130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354702343355940