Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq1810 86.0 5e-12 >seq1810 Length=4673341 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||||| | || | ||||||||| || || ||||| || || || ||||| || Sbjct 4157192 TTCCTCCTCTCAGCCGAAGCACCAAATGAAGGGTCGATTCCTTCTGGATATTGTAGTCTG 4157251 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | | |||| ||| || | || || || ||| |||||||||||||||| || | Sbjct 4157252 CAAGAGTTCGCCCATCCTCGAGCTGCTTCCCAGCAAAAATAAGCCTCTGTTGGTCCGGAG 4157311 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||| ||||| ||||| ||||| | ||| | || | ||| Sbjct 4157312 GGATTCCTTCCTTGTCCTGGATTTTCGTCTTCACATTATCAATCGTGTCCGAACTTTCGA 4157371 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| |||||| || ||||| || | ||||| ||||||||||||||| Sbjct 4157372 CCTCCAGGGTAATTGTCTTGCCCGTGAGGGTTTTCACAAAAATTTGCATT 4157421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419498195720805