Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1810 159 8e-34 seq5369 152 1e-31 seq790 152 1e-31 seq2011 136 9e-27 >seq1810 Length=4673341 Score = 159 bits (176), Expect = 8e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| |||| ||| || | ||| | || ||||| ||||| ||||| ||||| Sbjct 4157191 ATTCCTCCTCTCAGCCGAAGCACCAAATGAAGGGTCGATTCCTTCTGGATATTGTAGTCT 4157250 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||||||| || || || || || || ||||||||||| ||||||||||| || ||| Sbjct 4157251 GCAAGAGTTCGCCCATCCTCGAGCTGCTTCCCAGCAAAAATAAGCCTCTGTTGGTCCGGA 4157310 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || ||||| || || | || ||||| || | || || | ||| Sbjct 4157311 GGGATTCCTTCCTTGTCCTGGATTTTCGTCTTCACATTATCAATCGTGTCCGAACTTTCG 4157370 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || ||||| ||||| || || || ||||| ||||| || |||||| Sbjct 4157371 ACCTCCAGGGTAATTGTCTTGCCCGTGAGGGTTTTCACAAAAATTTGCATT 4157421 Score = 145 bits (160), Expect = 2e-29 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| || | || || | |||| || |||||||| |||||||||||||| Sbjct 4157647 ATTCCACCTCTGAGACGGAGAACCAAGTGTAGGGTGGATTCTTTTTGAATATTATAGTCG 4157706 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | || ||||| || || || |||||||| || |||||||| || || || Sbjct 4157707 GCCAGTGTACGCCCATCTTCAAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCCGGG 4157766 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAG-GTTC 104508 || || ||||| |||||||| || || | || ||||| || | ||||| | || ||| Sbjct 4157767 GGAATCCCTTCCTTATCCTGGATTTTGGTCTTGACATTATCAATCGTATC-CGAGCTTTC 4157825 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || ||||| ||||| ||||| || || || || || ||||||||| Sbjct 4157826 AACCTCCAGGGTAATCGTCTTGCCAGTGAGGGTCTTCACGAAAATCTGCATT 4157877 Score = 141 bits (156), Expect = 2e-28 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| || | || || || || | || ||||| || || || || ||||| Sbjct 4156963 ATTCCTCCTCTGAGACGGAGCACCAGGTGAAGGGTCGATTCCTTTTGTATGTTGTAGTCG 4157022 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || || || || || || || || || ||||| || |||||||| || || || Sbjct 4157023 GCGAGGGTCCTCCCATCCTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGG 4157082 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || ||||| || ||||||||||| | ||| ||||| |||| ||| || | || | || Sbjct 4157083 GGGATCCCTTCCTTGTCCTGAATCTTGGTTTTCACATTATCTATGGTGTC-CGAGCTCTC 4157141 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || || || || ||||||||||| || || ||||| ||||||||| Sbjct 4157142 CACCTCAAGAGTGATGGTTTTACCAGTAAGGGTCTTCACAAAGATCTGCATT 4157193 Score = 138 bits (152), Expect = 3e-27 Identities = 171/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| || | || || | || | || ||||||||||| || ||||| ||| Sbjct 4157875 ATTCCACCTCTGAGGCGGAGGACCAAGTGGAGGGTGGATTCTTTCTGGATGTTATAATCA 4157934 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || || || || || || || || |||||||| || |||||||| || || || Sbjct 4157935 GCAAGGGTCCTCCCATCCTCGAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGG 4157994 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC---GCTAGGT 104506 || |||||||| |||||||| || |||| || ||||| || | || || ||| | Sbjct 4157995 GGGATTCCTTCCTTATCCTGGATTTTTGTCTTCACATTGTCAATTGTGTCTGAGCT---T 4158051 Query 104507 TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || ||||| ||||| ||||| || || || ||||| || ||||| Sbjct 4158052 TCGACCTCAAGGGTAATGGTCTTTCCAGTGAGGGTCTTAACAAAGATTTGCAT 4158104 Score = 136 bits (150), Expect = 9e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || ||||| || || ||||| || | | ||||| || || || || ||||| ||| Sbjct 4156768 GTCGACTCTTTTTGGATGTTATAATCTGCCAAAGTTCGGCCATCCTCCAGCTGTTTCCCA 4156827 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || ||||| || || ||||| || ||||| || || ||||||||||||| || Sbjct 4156828 GCAAAGATCAGCCTTTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGAATCTTTGTCTTG 4156887 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||||||| ||| ||||| | || || ||||| |||||||| || Sbjct 4156888 ACATTATCAATGGTATCGGAGCTTTCAACCTCCAACGTGATGGTCTTTCCAGTAAGCGTC 4156947 Query 104543 TTTACAAATATCTGCATT 104560 || ||||| ||||||||| Sbjct 4156948 TTGACAAAGATCTGCATT 4156965 >seq5369 Length=1591519 Score = 152 bits (168), Expect = 1e-31 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||| || | || | || || || |||||||| ||||||||| Sbjct 1427458 ATTCCTCCCCGCAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCA 1427517 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | |||||||| ||||| || ||||| || ||||||||||| | |||||| || || || Sbjct 1427518 GCAAGAGTTCTTCCGTCCTCGAGTTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCCGGG 1427577 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || |||||||| || || |||||||| || || ||||| || | ||||| || | || Sbjct 1427578 GGGATTCCTTCCTTGTCTTGAATCTTGGCCTTAACATTGTCAATTGTATC-AGAGCTCTC 1427636 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| || || || |||||||| || || || || ||||| || ||||| Sbjct 1427637 TACCTCGAGCGTGATGGTCTTACCGGTGAGGGTCTTCACAAAAATTTGCAT 1427687 Score = 140 bits (154), Expect = 7e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || | || || || || || | ||| || |||||||| || ||||| || Sbjct 1427686 ATGCCACCCCTCAACCGGAGGACCAGGTGGAGTGTGGACTCTTTCTGGATGTTATAATCG 1427745 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | || | || ||||| || || || |||||||| || |||||||| || || || Sbjct 1427746 GCCAAGGTGCGGCCATCTTCGAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCCGGG 1427805 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || ||||| || || ||||| ||||| || |||||||| || | ||| ||| || | || Sbjct 1427806 GGAATTCCCTCCTTGTCCTGGATCTTGGCCTTTACATTATCGATGGTGTCGG-AGCTCTC 1427864 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||| |||||||||||||| || ||||| || || ||||| Sbjct 1427865 AACCTCAAGGGTAATGGTCTTACCAGTAAGGGTCTTTACGAAGATTTGCAT 1427915 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || |||||||| | || || | ||| ||||| ||||| || ||| Sbjct 1426579 GTCGACTCCTTCTGGATGTTATAGTCTGCAAGGGTGCGACCATCTTCAAGTTGCTTCCCA 1426638 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || |||||||| ||||| || || || || || || ||||||||||||| || Sbjct 1426639 GCGAAGATCAGCCTCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGAATCTTTGACTTG 1426698 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | |||||| | || ||||| | || || ||||| ||||| | || Sbjct 1426699 ACATTATCGATGGTATCAGAACTCTCGACCTCCAAGGTGATGGTCTTCCCAGTCAAGGTC 1426758 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 1426759 TTCACAAAGATTTGCAT 1426775 >seq790 Length=1848252 Score = 152 bits (168), Expect = 1e-31 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || |||| | ||| || | || | || || || ||||| || ||||||||| Sbjct 1587775 ATTCCTCCCCTTAAACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCA 1587716 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||||| || ||||| || ||||| || ||||||||||| | |||||| || || || Sbjct 1587715 GCAAGAGTCCTTCCGTCCTCAAGTTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGG 1587656 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || |||||||| || ||||||||||| || || ||||| || | ||| || | || | || Sbjct 1587655 GGGATTCCTTCCTTGTCCTGAATCTTGGCCTTCACATTATCAATGGTGTC-CGAGCTCTC 1587597 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | || || ||||| ||||| ||||| || || || |||||||| Sbjct 1587596 CACCTCCAAGGTGATGGTCTTGCCAGTGAGTGTCTTAACGAAGATCTGCAT 1587546 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || || |||||||| | ||||| | ||| ||||| ||||| || ||| Sbjct 1588426 GTCGACTCCTTTTGGATGTTATAGTCCGCAAGAGTGCGACCATCTTCAAGTTGCTTCCCA 1588367 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| ||||| || || || || || || ||||||||||||||||| Sbjct 1588366 GCAAAGATCAGCCTCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTTTGCTTTG 1588307 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | |||||| | || ||||| | || || ||||| ||||| | ||| Sbjct 1588306 ACATTATCGATGGTATCAGAACTCTCGACCTCCAAGGTGATGGTCTTCCCAGTCAAGGTT 1588247 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 1588246 TTCACAAAAATCTGCAT 1588230 Score = 134 bits (148), Expect = 3e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | ||| || || || | || || || |||||||| |||||||| Sbjct 1587547 ATGCCTCCCCTCAGACGAAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCG 1587488 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | || | || ||||| || || || |||||||| || |||||||| || || || Sbjct 1587487 GCCAAGGTGCGGCCATCTTCGAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGT 1587428 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || ||||| || || || || ||||| || || ||||| || | |||||| || | || Sbjct 1587427 GGGATTCCCTCCTTGTCTTGGATCTTGGCCTTAACATTGTCAATTGTATCGG-AGCTCTC 1587369 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| || || || ||||||||||| || || || ||||| |||||||| Sbjct 1587368 TACCTCGAGAGTGATTGTCTTACCAGTGAGGGTCTTCACAAAAATCTGCAT 1587318 >seq2011 Length=5003947 Score = 136 bits (150), Expect = 9e-27 Identities = 163/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || || || | || || |||||||| ||||| || |||| || || | Sbjct 3036685 AGCCTGAGAACAAGGTGAAGGGTGGACTCTTTCTGGATATTGTAATCAGCGAGGGTGCGC 3036744 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 |||||||| || || ||||| ||||| || ||||| || || ||||| || || || || Sbjct 3036745 CCGTCTTCAAGCTGCTTTCCTGCAAAGATGAGCCTTTGCTGGTCAGGCGGGATCCCCTCC 3036804 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGT 104520 || |||||||||||||| || || || || | ||| || || | || ||||| || || Sbjct 3036805 TTGTCCTGAATCTTTGCCTTCACGTTGTCGATGGTGTC-TGAGCTCTCCACCTCGAGCGT 3036863 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| || || || || || || || ||||||||||| Sbjct 3036864 AATAGTTTTCCCTGTCAGGGTCTTGACGAATATCTGCAT 3036902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151141636357740