Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq3224 95.1 1e-14 seq2214 95.1 1e-14 seq5369 89.7 4e-13 seq4810 82.4 6e-11 seq2370 82.4 6e-11 seq1932 82.4 6e-11 seq790 82.4 6e-11 >seq3224 Length=4215183 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | | || |||||||||||||||| ||| | | Sbjct 2572746 CTCCTTCTGGATGTTGTAGTCGGCGAGTGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAA 2572805 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| ||| || | | ||||||||| || ||| ||| | | Sbjct 2572806 GATGAGCCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACATT 2572865 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| ||| | ||||| ||||| ||||| || || || ||||| || ||||| Sbjct 2572866 GTCGATGGTGTCGCTGGACTCAACCTCGAGGGTTATCGTCTTCCCCGTGAGGGTCTTCAC 2572925 Query 48715 AAAAATCTGCATCGTGTCTTGATCG 48739 || ||||||||| | ||||| || Sbjct 2572926 GAAGATCTGCATCTTTGCTTGAGCG 2572950 >seq2214 Length=9977371 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | | || |||||||||||||||| ||| | | Sbjct 6800434 CTCCTTCTGGATGTTGTAGTCGGCGAGTGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAA 6800493 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| ||| || | | ||||||||| || ||| ||| | | Sbjct 6800494 GATGAGCCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACATT 6800553 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| ||| | ||||| ||||| ||||| || || || ||||| || ||||| Sbjct 6800554 GTCGATGGTGTCGCTGGACTCAACCTCGAGGGTTATCGTCTTCCCCGTGAGGGTCTTCAC 6800613 Query 48715 AAAAATCTGCATCGTGTCTTGATCG 48739 || ||||||||| | ||||| || Sbjct 6800614 GAAGATCTGCATCTTTGCTTGAGCG 6800638 >seq5369 Length=1591519 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| |||| | | ||| || || || ||| |||||| |||||||| || ||||| Sbjct 1427461 CCTCCCCGCAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCAGCA 1427520 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || ||||||| || ||||| || | |||| || | |||||| ||| || Sbjct 1427521 AGAGTTCTTCCGTCCTCGAGTTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCCGGGGGG 1427580 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||||||| ||| || ||| | | | || ||||| | ||| | Sbjct 1427581 ATTCCTTCCTTGTCTTGAATCTTGGCCTTAACATTGTCAATTGTATCAGAGCTCTCTACC 1427640 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || ||||| ||||||||||| || ||||||||||| ||||| Sbjct 1427641 TCGAGCGTGATGGTCTTACCGGTGAGGGTCTTCACAAAAATTTGCAT 1427687 >seq4810 Length=5543293 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || ||||| ||| | ||||| |||||||| ||| || | Sbjct 518184 CTCCTTCTGGATGTTGTAGTCGGCCAAGGTTCGGCCATCCTCGAGCTGCTTCCCGGCGAA 518125 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTG---AT 48651 || | | |||||| ||| ||| | | ||||||||| || || |||| || Sbjct 518124 GATCAGCCTCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTA-GCTTTCACAT 518066 Query 48652 AGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTT 48711 | || ||||| |||| ||| ||| | || ||||| || ||||||||||| || Sbjct 518065 TGTCG--ATGGTGTCGGAGCTCTCGACCTCAAGCGTGATGGTCTTGCCGGTGAGAGTCTT 518008 Query 48712 CACAAAAATCTGCAT 48726 ||||| |||||||| Sbjct 518007 GACAAAGATCTGCAT 517993 >seq2370 Length=1017971 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/206 (69%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||||||||| | || ||||||| || ||| Sbjct 237601 TGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCGAGGGTGCGGCCGTCCTCGAGTTGC 237542 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||| ||| ||| | | ||||||||| || || Sbjct 237541 TTCCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATTCCCTCCTTGTCCTGGATCTTA 237482 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||||| | | || || || || | |||||| ||||| || || || || || | Sbjct 237481 GCCTTGACGTTGTCG--ATCGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTCCCCG 237424 Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727 | || || ||||| || ||||||||| Sbjct 237423 TCAGGGTCTTCACGAAGATCTGCATC 237398 >seq1932 Length=4064500 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||| || || || | || ||||||| |||||||||||| || | Sbjct 3415071 CTCCTTCTGGATGTTATAGTCGGCGAGGGTCCGGCCGTCCTCGAGCTGCTTACCGGCGAA 3415130 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| ||| ||| | | ||||||||| || ||| ||||| Sbjct 3415131 GATAAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTGACGTT 3415190 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || || |||| ||| ||||| || || || || |||||||| |||||||| Sbjct 3415191 ATCGATCGTGTCGGAGCTCTCGACCTCGAGCGTGATAGTCTTGCCGGTGAGGGTTTTCAC 3415250 Query 48715 AAAAATCTGCATC 48727 || ||||||||| Sbjct 3415251 GAAGATCTGCATC 3415263 >seq790 Length=1848252 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||| || ||||| ||||| || | | | | ||||| |||||| Sbjct 1587976 TGAAGGGTGGACTCCTTCTGGATGTTATAATCTGCGAGGGTCCTCCCATCCTCGAGCTGC 1587917 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || || | || | | |||||| || || | || |||||| ||| || || Sbjct 1587916 TTCCCTGCGAAGATGAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTATCCTGGATCTTG 1587857 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | ||||||| |||| |||| ||| | || ||||| || ||||| Sbjct 1587856 GCCTTGACATTGTCTATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCTTCCCGGTC 1587797 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || ||||||||||||||||| Sbjct 1587796 AGGGTCTTCACAAAAATCTGCAT 1587774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421161842747405