Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq548 114 7e-21 seq5034 113 2e-20 seq2440 113 2e-20 seq1810 113 2e-20 seq6319 111 8e-20 seq5775 109 3e-19 seq1287 109 3e-19 seq5809 107 1e-18 seq3240 107 1e-18 seq1941 107 1e-18 seq4293 105 3e-18 >seq548 Length=2303557 Score = 114 bits (126), Expect = 7e-21 Identities = 77/87 (89%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| || ||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 644233 AAAAGATAAAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 644292 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||| ||||| Sbjct 644293 GCTCTAACCAACTGAGCTAATAGGCCG 644319 >seq5034 Length=2374447 Score = 113 bits (124), Expect = 2e-20 Identities = 79/90 (88%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 11443 TAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 166231 TAAAAAATGAAAACATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 166290 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||| ||||||||||||||| ||||| Sbjct 166291 GACGCTCTAACCAACTGAGCTAATAGGCCG 166320 >seq2440 Length=3503224 Score = 113 bits (124), Expect = 2e-20 Identities = 75/83 (90%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 2903421 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 2903362 Query 11512 CAACTGAGCTAATGGGCCGTCGA 11534 ||||||||||||| |||| |||| Sbjct 2903361 CAACTGAGCTAATAGGCC-TCGA 2903340 >seq1810 Length=4673341 Score = 113 bits (124), Expect = 2e-20 Identities = 79/91 (87%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 || ||||| || ||| ||||||||| | | |||||||| ||||||||||||||||||| Sbjct 2272862 TTTATAAAGAAAAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 2272803 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| ||||||||||||||| |||| Sbjct 2272802 ACGACGCTCTAACCAACTGAGCTAATAGGCC 2272772 >seq6319 Length=5966559 Score = 111 bits (122), Expect = 8e-20 Identities = 78/90 (87%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||||||||||||| | | |||||||| | ||||||||||||||||||||||| Sbjct 3801934 AAAAAAAAAATTGGCCCATGCAGGTCTCGAACCTGCTACCTTCGCGTTATTAGCACGACG 3801993 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTCGA 11534 ||| ||||||||||||||| |||||| || Sbjct 3801994 TTCTAACCAACTGAGCTAATAGGCCGTTGA 3802023 >seq5775 Length=2503 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1094 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1035 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 1034 TGAGCTAATGGGCC 1021 >seq1287 Length=5097827 Score = 109 bits (120), Expect = 3e-19 Identities = 82/96 (85%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 ||| |||| ||| | |||| |||||||| | | |||||||| ||||||||||||||| Sbjct 1155795 AGATTTAAAAAATGGTTAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTAT 1155853 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||||| ||||||||||||||| ||||| Sbjct 1155854 TAGCACGACGCTCTAACCAACTGAGCTAATAGGCCG 1155889 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 593110 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 593051 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 593050 CAACTGAGCTAATAGGCC 593033 >seq5809 Length=1953311 Score = 107 bits (118), Expect = 1e-18 Identities = 75/86 (87%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 1045851 AAAAAATAGACATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 1045792 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 1045791 GCTCTAACCAACTGAGCTAATAGGCC 1045766 >seq3240 Length=2626545 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 354713 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 354772 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 354773 CAACTGAGCTAATAGGCC 354790 >seq1941 Length=2231304 Score = 107 bits (118), Expect = 1e-18 Identities = 75/85 (88%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| || ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 1213074 AAAAATAAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 1213017 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 1213016 CTCTAACCAACTGAGCTAATAGGCC 1212992 >seq4293 Length=5823730 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 5247407 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 5247466 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 5247467 CTGAGCTAATAGGCC 5247481 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261435731587780