Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4733 176 7e-40 seq666 149 1e-31 seq5556 125 1e-24 seq2214 125 1e-24 seq4939 122 1e-23 seq5808 120 5e-23 seq4293 120 5e-23 seq5809 118 2e-22 seq813 114 2e-21 >seq4733 Length=1469 Score = 176 bits (194), Expect = 7e-40 Identities = 174/225 (77%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | || || ||||||||||| || |||||||| || ||||| Sbjct 227 CGCCAAGCGTCATCGCAAAGTCCTGCGTGATAACATCCAGGGTATCACCAAACCCGCTAT 168 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||| || || || ||||||||| ||||||| | |||| || |||| Sbjct 167 CCGTCGTCTGGCTCGCCGCGGCGGTGTCAAGCGTATCTCTGGTCTCATCTACGAGGAGAC 108 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| | ||||| | | ||| |||| ||| ||| || ||| ||||| Sbjct 107 CCGTGGTGTGCTGAAGGTGTTCCTTGAAAACGTCATCCGTGACGCTGTCACCTACACCGA 48 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 |||||| || | |||||||| ||| | ||||| |||| || || Sbjct 47 GCACGCCAAGAGGAAGACTGTGACCGCTATGGACGTCGTGTACGC 3 >seq666 Length=4378875 Score = 149 bits (164), Expect = 1e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||| | ||||||| | || || | || |||||||| |||||||| ||||| || || Sbjct 167108 GCAAAGAGGCATCGCAAGGTC-CTGAGGGACAACATCCAGGGAATCACGAAGCCGGCGAT 167166 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| |||||||| ||||||||| || ||| || |||| || |||| Sbjct 167167 CCGGCGTCTGGCTCGCCGTGGTGGCGTCAAGCGTATCAGTGGTCTGATCTACGAGGAGAC 167226 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || |||||||| ||||| ||| ||| ||| ||||| | || || || Sbjct 167227 CCGTGGCGTCTTGAAGATTTTCCTGGAGAACGTCATCAGAGATGCGGTGACTTACACTGA 167286 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662 |||||| | | ||||| || ||| |||||||| |||| || ||| |||| Sbjct 167287 GCACGCGAGGAGGAAGACGGTTACCGCCATGGATGTCGTGTACGCACTGAA 167337 >seq5556 Length=3259660 Score = 125 bits (138), Expect = 1e-24 Identities = 175/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | | || || || || ||||| || || ||||||||||| ||||| Sbjct 602620 GCGAAGCGTCACCGTAAGGTC-CTCCGTGACAACATTCAGGGCATCACCAAGCCGGCTAT 602562 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || || || ||||| || ||||||||| || || | |||| || |||| Sbjct 602561 CCGCCGCCTCGCCCGCCGTGGAGGCGTCAAGCGTATCAGCGGCCTCATCTACGAGGAGAC 602502 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||||||||||| ||| || |||| ||| || || ||| || || Sbjct 602501 GCGTGGGGTCCTAAAGATCTTCCTGGAGAATGTCATCCGTGACGCCGTCACCTACACGGA 602442 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| ||||| ||||||| | ||||| || |||| | || || Sbjct 602441 GCACGCCCGCCGGAAGACGGTCACTGCCATGGACGTGGTCTACGCTCTGAAGAGGCAGGG 602382 Query 16672 CCG 16674 ||| Sbjct 602381 CCG 602379 >seq2214 Length=9977371 Score = 125 bits (138), Expect = 1e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| ||||| || || ||||| Sbjct 8458403 CTCCGCGACAACATCCAGGGGATCACCAAGCCTGCCATCCGCCGTCTCGCCCGCCGTGGA 8458462 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| || || | |||| || |||| || | || ||||||||||| Sbjct 8458463 GGCGTCAAGCGAATCAGCGGCCTCATCTACGAGGAGACCCGCGGGGTCCTGAAGATCTTC 8458522 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| ||||||||||| || ||||| || Sbjct 8458523 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGGAAGACCGTG 8458582 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||||||| ||||||| || | || || || ||| Sbjct 8458583 ACTGCCATGGACGTCGTCTACGCCCTCAAGCGACAGGGC 8458621 >seq4939 Length=4123586 Score = 122 bits (134), Expect = 1e-23 Identities = 162/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||| ||||| || || Sbjct 887594 CGCCAAGCGCCACCGCAAGGTGCTGCGGGACAACATCCAGGGGATCACGAAGCCTGCAAT 887653 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||||||| || |||||||| ||||| || ||| | |||| || |||| Sbjct 887654 CCGTCGCCTGGCTCGGCGAGGTGGAGTGAAGCGGATCAGTGGGCTCATCTACGAGGAGAC 887713 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||||||||||| ||| ||| || | |||||| || ||| || || Sbjct 887714 CCGTGGCGTCCTCAAGATCTTCCTGGAGAACGTGATTCGTGATGCCGTCACCTACACTGA 887773 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 ||| || | ||||| || || |||||||| | || ||||| Sbjct 887774 GCATGCACGCAGGAAGACCGTGACGGCCATGGATGTGGTGTATGC 887818 >seq5808 Length=210204 Score = 120 bits (132), Expect = 5e-23 Identities = 163/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | | || ||||| || |||||||| || |||||||||||||| || Sbjct 99421 GCCAAGCGTCACCGTAAGGTC-CTTCGGGACAACATCCAGGGTATCACCAAGCCAGCCAT 99363 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || | ||||| ||| | || || || ||| || | ||| | |||| || |||| Sbjct 99362 CCACAGGCTGGCCCGTAGGGGCGGCGTGAAGTGTATAAGTGGTCTCATCTACGAGGAGAC 99303 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || |||||||||||||| ||| ||| ||| |||| | ||| || || Sbjct 99302 TCGTGGGGTGCTGAAGATCTTCCTCGAGAACGTCATCAGAGATGTCGTGACCTACACTGA 99243 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 |||||| || ||||| || ||| |||||||| | ||||| || Sbjct 99242 GCACGCCTGCCGCAAGACCGTGACCGCCATGGATGTTGTCTACGC 99198 >seq4293 Length=5823730 Score = 120 bits (132), Expect = 5e-23 Identities = 171/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || ||||| || || ||||| ||||| || || || | || ||||| || || || ||| Sbjct 3935997 GACAACATTCAGGGGATCACGAAGCCCGCCATTCGGAGGCTTGCTCGCCGGGGAGGGGTC 3936056 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || ||| || |||| ||||||| | | || ||||||||||||| || Sbjct 3936057 AAGCGTATCAGTGGGCTGATCTACGAAGAGACGAGAGGCGTCCTGAAGATCTTCCTGGAG 3936116 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||||||| ||||||| | ||| || |||||||| | ||||| || ||| || Sbjct 3936117 AATGTTATCCGTGATGCTGTTACCTACACTGAGCACGCCCGCAGGAAGACCGTGACCGCC 3936176 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | || || || | || | || ||||| | | |||||||| ||| ||||| Sbjct 3936177 ATGGACGTTGTGTACGCGCTCAAGAGGCAGGGCCGCACCCTCTATGGTTTCGGAGGTTAA 3936236 Query 16700 T 16700 | Sbjct 3936237 T 3936237 >seq5809 Length=1953311 Score = 118 bits (130), Expect = 2e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| |||||||| ||||| || ||||| || |||||||| | || || || Sbjct 1776618 GACAACATCCAGGGAATCACGAAGCCGGCCATCCGCCGGCTGGCTCGCAGGGGCGGTGTG 1776559 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || || || |||| || |||| || | || | ||||| ||||| || Sbjct 1776558 AAGCGTATCAGCGGCCTGATCTACGAGGAGACGCGCGGGGTCCTCAAGATATTCCTGGAG 1776499 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| || || || ||| ||||||||||| || ||||| |||||| || Sbjct 1776498 AACGTGATCCGGGACGCCGTCACCTACACCGAGCACGCCCGCCGGAAGACCGTCACCGCC 1776439 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||||| ||||||| || | || | || ||||| Sbjct 1776438 ATGGACGTCGTCTACGCGCTCAAGAGGCAGGGCCG 1776404 >seq813 Length=2976281 Score = 114 bits (126), Expect = 2e-21 Identities = 162/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | | || || || || |||||||| || ||||||||||| || || Sbjct 2057376 GCCAAGCGTCACCGTAAGGTC-CTCCGGGACAACATCCAGGGGATCACCAAGCCGGCCAT 2057318 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| ||| | || || || |||||| || ||| | | || || |||| Sbjct 2057317 CCGCAGGCTGGCCCGTAGGGGCGGCGTGAAGCGTATCAGTGGTCTCATTTACGAGGAGAC 2057258 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || |||||||||||||| ||| ||| ||| ||||| | ||| || || Sbjct 2057257 CCGTGGGGTGCTGAAGATCTTCCTCGAGAACGTCATCAGAGATGCCGTGACCTACACTGA 2057198 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 |||||| || ||||| || ||| ||||||| | ||||| || Sbjct 2057197 GCACGCCCGCCGCAAGACCGTGACCGCCATGGACGTTGTCTACGC 2057153 Score = 98.7 bits (108), Expect = 2e-16 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | | || || || || |||||||| || ||||||||||| || || Sbjct 2058523 GCCAAGCGTCACCGTAAGGTC-CTCCGGGACAACATCCAGGGGATCACCAAGCCGGCCAT 2058465 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| ||| | || || || |||||| || ||| | | || || |||| Sbjct 2058464 CCGCAGGCTGGCCCGTAGGGGCGGCGTGAAGCGTATCAGTGGTCTCATTTACGAGGAGAC 2058405 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || |||||||||||||| ||| ||| ||| ||||| | ||| || || Sbjct 2058404 CCGTGGGGTGCTGAAGATCTTCCTCGAGAACGTCATCAGAGATGCCGTGACCTACACTGA 2058345 Query 16612 GCACGC 16617 |||||| Sbjct 2058344 GCACGC 2058339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79059286486665