Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq2507 154 2e-32 seq3240 93.3 5e-14 seq6319 84.2 3e-11 >seq2507 Length=3123735 Score = 154 bits (170), Expect = 2e-32 Identities = 177/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 138640 TTGTTCCCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACC 138699 |||| || || | ||| | |||| ||| | |||| | | ||||| ||||| |||| Sbjct 2652331 TTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACC 2652272 Query 138700 TACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGA 138759 |||| || ||||| ||||| || || || || |||||||| |||||||||||||| || | Sbjct 2652271 TACGTGCCTATGACTTCGTTTCCCAGGAGATCCGTGCAGCGGAAGATCCTGAATTTGAAA 2652212 Query 138760 CCTTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGG 138819 | ||||||||||| || ||||| | || |||||| | ||||| |||||||| || | Sbjct 2652211 CTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAG 2652152 Query 138820 ATCAACCTCACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 |||| ||||| |||||| || | || || || || || | || | || |||||||| Sbjct 2652151 ATCAGCCTCATGAAAACCTTATATTCCCAGAGGAGGTTCTACCCCGTGGAAACGCTCT 2652094 Score = 136 bits (150), Expect = 5e-27 Identities = 149/196 (76%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138379 AGGGTTTCCATAACTGGACCCTCAACCCCTTTCATATGATGGGCGTAGCAGGTATTCTTG 138438 |||||||| |||| ||||| | | ||| |||||||||||||| || || ||| | | | Sbjct 2014071 AGGGTTTC-ATAATTGGACATTGAGCCCATTTCATATGATGGGGGTTGCTGGTGTATTGG 2014013 Query 138439 G---TGGTGCTCTGCTCTGTGCTATTCATGGTGCTACAGTAGAAAATACTTTGTATGAAG 138495 | || |||||| || || ||||| |||||||||||| ||||||||||| | | ||||| Sbjct 2014012 GCGCTGCTGCTCTACTATGCGCTATCCATGGTGCTACAATAGAAAATACTGTATTTGAAG 2013953 Query 138496 ATGGCGAACAATCAAATACTTTTAAAGCATTTGAACCTACTCAAGAAGAAGAAACCTATT 138555 |||| || ||||||| || || ||| | || ||||||| ||| |||| |||| Sbjct 2013952 ATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAAAAACTTATT 2013893 Query 138556 CAATGGTTACTGCTAA 138571 || |||| |||||||| Sbjct 2013892 CAGTGGTCACTGCTAA 2013877 >seq3240 Length=2626545 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/164 (73%), Gaps = 4/164 (2%) Strand=Plus/Plus Query 136169 GGTATCTGGTTTGCTGCCCTGGGCGTATC--TACGATGGCGTTCAACCTCAATGGATTCA 136226 |||||||||||| |||| | | ||||| || ||||| |||||||| ||||| |||| Sbjct 808435 GGTATCTGGTTTACTGCTTTAG--GTATCAGCACTATGGCTTTCAACCTAAATGGTTTCA 808492 Query 136227 ACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAACACCTGGGCAGATGTGC 136286 | |||||||| || | || | | ||||||||||| | || || ||||| ||| | Sbjct 808493 ATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTA 808552 Query 136287 TGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGTCAA 136330 | || || ||| || |||||||| || ||||| || ||| || Sbjct 808553 TTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAA 808596 >seq6319 Length=5966559 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 135938 GTCTTCGGTGGTTCTCTGTTCTCTGCTATGCATGGATCTCTTGTCACCTCTAGTCTTGTA 135997 || ||||| ||||| || ||| |||||||||||| || | || ||||||||| | | Sbjct 1421242 GTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATC 1421183 Query 135998 CGTGAGACGACTGAGGTAGAATCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAG 136057 | || || || || |||| || | ||||||| ||||| ||||| ||||| Sbjct 1421182 AGGGAAACCACAGAAAATGAATATGCTAATGAAGGTTACAGATTCGGGCAAGAGGAAGAA 1421123 Query 136058 ACTTACAACATTGTTGCTGCTCATGGTTA 136086 ||||| || || || |||||||||||||| Sbjct 1421122 ACTTATAATATCGTAGCTGCTCATGGTTA 1421094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627831377712000