Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq3240 96.9 1e-15 seq4293 93.3 1e-14 >seq3240 Length=2626545 Score = 96.9 bits (106), Expect = 1e-15 Identities = 120/162 (74%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 20085 GGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAAC 20144 || || ||| |||| | | || ||| ||||||||||||||||||| |||||||| || Sbjct 808435 GGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAAT 808494 Query 20145 TTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAACATGGGCTGATGTATT 20203 || ||||| || ||||||||| ||||| || |||| || ||||||||| | | Sbjct 808495 TTCAACCAATCTGTAGTTGATAGTCAA-GGTCGTGTAATTAATACTTGGGCTGATATTAT 808553 Query 20204 AAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAA 20245 || | |||||||| || | ||||||||||| || || || Sbjct 808554 TAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 808595 >seq4293 Length=5823730 Score = 93.3 bits (102), Expect = 1e-14 Identities = 111/148 (75%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 20127 AACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCC 20185 ||||| |||||||| || || ||||| | ||||||||| ||||| | | |||| Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTG-TAATAAA 2155198 Query 20186 AACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAA 20245 || ||||||||| | | || | |||||||| || | ||||||||||| || || || Sbjct 2155197 TACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 2155138 Query 20246 TGCTCATAACTTCCCACTTGATTTAGCT 20273 ||||||||||||||| || || ||||| Sbjct 2155137 TGCTCATAACTTCCCTCTAGACCTAGCT 2155110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144411746178180