Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq3240 131 3e-25 seq4293 123 4e-23 seq4399 91.5 2e-13 >seq3240 Length=2626545 Score = 131 bits (144), Expect = 3e-25 Identities = 119/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 212371 TGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAAC 212430 ||||| || || | |||||| |||| ||||| |||||||||||||| ||||| |||||| Sbjct 808441 TGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAAC 808500 Query 212431 CAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGA 212490 ||||| || |||||| |||| || || |||||||| |||| || ||||| | Sbjct 808501 CAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATTAACCGC 808560 Query 212491 GCAAACCTTGGTATGGAAGTTATGCACGAA 212520 || ||||||||||||||||||||||| ||| Sbjct 808561 GCTAACCTTGGTATGGAAGTTATGCATGAA 808590 >seq4293 Length=5823730 Score = 123 bits (136), Expect = 4e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 212407 AACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCT 212466 ||||||||||| ||||| |||||||||| || |||||| |||| || | | Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 212467 ACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAAT 212526 ||||||| |||| |||||||| | || ||||||||||||||||||||||| ||| | ||| Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 212527 GCACACAACTTCCCACTTGACTTAGC 212552 || || |||||||| || ||| |||| Sbjct 2155136 GCTCATAACTTCCCTCTAGACCTAGC 2155111 >seq4399 Length=3202280 Score = 91.5 bits (100), Expect = 2e-13 Identities = 80/99 (81%), Gaps = 3/99 (3%) Strand=Plus/Minus Query 212466 TACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAA 212525 |||||||| |||| || ||||| | | ||||||||||||||||||||||| ||| | || Sbjct 214272 TACTTGGGCTGATATTATTAACCGCGTTAACCTTGGTATGGAAGTTATGCATGAACGTAA 214213 Query 212526 TGCACACAACTTCCCACTTGACTTAGCATCTGCTAACGA 212564 ||| || |||||||| || ||| ||| |||||| ||| Sbjct 214212 TGCTCATAACTTCCCTCTAGACCTAG---CTGCTATCGA 214177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807379506271800