Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq4293 105 8e-18 seq4399 87.8 2e-12 seq3240 86.0 7e-12 >seq4293 Length=5823730 Score = 105 bits (116), Expect = 8e-18 Identities = 116/151 (77%), Gaps = 10/151 (7%) Strand=Plus/Minus Query 171503 AACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGAT--TGTAC 171560 ||||| || || ||||| |||||||||| |||||| || | | ||| | |||| Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAAT---TTGTAGTTGATA--GTCAAGGTCGTGTAA 2155202 Query 171561 CAA---CATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAA 171617 || | |||| ||| |||||||| | || |||||||| |||||||||||||||||| Sbjct 2155201 TAAATACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAAC 2155142 Query 171618 GAAATGCACACAACTTCCCACTAGACCTAGC 171648 | ||||| || |||||||| ||||||||||| Sbjct 2155141 GTAATGCTCATAACTTCCCTCTAGACCTAGC 2155111 >seq4399 Length=3202280 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 171563 ACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAAT 171622 || |||| ||| || ||||| | | |||||||| |||||||||||||||||| | ||| Sbjct 214271 ACTTGGGCTGATATTATTAACCGCGTTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 214212 Query 171623 GCACACAACTTCCCACTAGACCTAGC 171648 || || |||||||| ||||||||||| Sbjct 214211 GCTCATAACTTCCCTCTAGACCTAGC 214186 >seq3240 Length=2626545 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 171467 TGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAAC 171526 ||||| || || | |||||| | || ||||| |||||||| || || ||||| |||||| Sbjct 808441 TGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAAC 808500 Query 171527 CAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGA 171586 ||||| || || ||| | || | | || |||| ||| || ||||| | Sbjct 808501 CAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATTAACCGC 808560 Query 171587 GCAAACCTTGGAATGGAAGTTATGCATGAA 171616 || |||||||| |||||||||||||||||| Sbjct 808561 GCTAACCTTGGTATGGAAGTTATGCATGAA 808590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570144730894200