Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2977 131 1e-25 seq2945 131 1e-25 seq1026 127 1e-24 seq471 116 2e-21 seq9406 113 3e-20 seq2011 100 2e-16 seq1080 100 2e-16 seq1810 96.9 2e-15 seq5054 87.8 1e-12 seq5369 86.0 4e-12 seq790 84.2 1e-11 >seq2977 Length=12861 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 8685 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 8626 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 8625 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 8591 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 6692 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 6633 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 6632 GCCCGTATTTAGCCTT 6617 >seq2945 Length=173978 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 98441 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 98500 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 98501 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 98535 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 133885 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 133944 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 133945 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 133979 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||| |||||||||||||||| ||||||||| |||| || |||||||| Sbjct 167595 AAGCCCGTTCCCATGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 167654 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 167655 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 167689 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| ||||||| ||||||||| ||| ||||||| |||||||||||| | Sbjct 100770 CTCTCTCTTCAAAGTCCTTTTCATCTTTCCCTCGCGGCACTTGTTTGCTATCGGTCTCTC 100829 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 100830 GCCCGTATTTAGCCTT 100845 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 135906 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 135965 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 135966 GCCCGTATTTAGCCTT 135981 Score = 87.8 bits (96), Expect = 1e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 169588 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 169647 Query 20007 GGTAATATTTAGCCTT 20022 | || |||||||| Sbjct 169648 GCCCGTAGTTAGCCTT 169663 >seq1026 Length=119729 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||| |||||||||||||||| ||||||||| |||| || |||||||| Sbjct 3327 AAGCCCGTTCCCATGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 3386 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 3387 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 3421 Score = 87.8 bits (96), Expect = 1e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 5320 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 5379 Query 20007 GGTAATATTTAGCCTT 20022 | || |||||||| Sbjct 5380 GCCCGTAGTTAGCCTT 5395 >seq471 Length=9362 Score = 116 bits (128), Expect = 2e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 4979 CTCTCTCTTCAAAGTTCTTTTCACCTTTCCCTCACGGTACTTGTGTGCTATCGGTCTCGT 4920 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 4919 GGTCATATTTAGCCTTA 4903 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||| | | |||||||||| ||||||||||||| || |||||||| Sbjct 7337 AAGTCCGTTCCCTTGCCAGCGGTTTCGCTACATAGTAGATAGGGACAGTGGGAATCTCGT 7278 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||| ||||||||||| Sbjct 7277 TAATCCATTCATGCGCGTCACTAGTTAGATGACGA 7243 >seq9406 Length=221 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 14 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTCCACTATCGGTCTCGT 73 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||||||||| Sbjct 74 GGCCGTATTTAGCCTTA 90 >seq2011 Length=5003947 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 ||||| ||| ||| || || ||||||||||||| | || |||| || | || Sbjct 3036700 TGAAGGGTGGACTCTTTCTGGATATTGTAATCAGCGAGGGTGCGCCCGTCTTCAAGCTGC 3036759 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 ||||| ||||| || || | ||| || || | |||| || || |||||| ||| ||| Sbjct 3036760 TTTCCTGCAAAGATGAGCCTTTGCTGGTCAGGCGGGATCCCCTCCTTGTCCTGAATCTTT 3036819 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 |||||| || | || || ||| || || || || | ||||||||||| || ||| Sbjct 3036820 GCCTTCACGTTGTCGATGGTGTCTGAGCTCTCCACCTCGAGCGTAATAGTTTTCCCTGTC 3036879 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 | ||| || |||||||||||||| Sbjct 3036880 AGGGTCTTGACGAATATCTGCAT 3036902 >seq1080 Length=4942101 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||| | |||||||||||| |||| || ||||||||| |||| || ||||| || Sbjct 3776602 AAGCATGGTCCCTTGGCTGTAGTTTTACTGGATAGTAGACAGGGAAAGTGGGAATCTTGT 3776543 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 3776542 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 3776508 >seq1810 Length=4673341 Score = 96.9 bits (106), Expect = 2e-15 Identities = 165/236 (70%), Gaps = 9/236 (4%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||||| || | |||||||||||| || ||||| || |||||||| | Sbjct 4157190 CATT-CCTCCTCTCAGCCGAAGCACCAAATGAAGGGTCGATTCCTTCTGGATATTGTAGT 4157248 Query 38146 CAGACAAAACACGTTCG----TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGA 38201 | | ||| | ||||| || || | || || || ||||| || || | ||||| Sbjct 4157249 CTG-CAAGA---GTTCGCCCATCCTCGAGCTGCTTCCCAGCAAAAATAAGCCTCTGTTGG 4157304 Query 38202 TCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCA 38261 || | |||| ||||| |||||| ||||| ||||||||| | | || || | Sbjct 4157305 TCCGGAGGGATTCCTTCCTTGTCCTGGATTTTCGTCTTCACATTATCAATCGTGTCCGAA 4157364 Query 38262 CTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || || | ||||| || || ||||| | ||||||||| || || ||||| Sbjct 4157365 CTTTCGACCTCCAGGGTAATTGTCTTGCCCGTGAGGGTTTTCACAAAAATTTGCAT 4157420 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| |||||||| | ||| | ||||| || || ||| || ||||||||||| || | Sbjct 4157646 CATT-CCACCTCTGAGACGGAGAACCAAGTGTAGGGTGGATTCTTTTTGAATATTATAGT 4157704 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | | || ||| | || || | || || || ||||| || || | || || || | Sbjct 4157705 CGGCCAGTGTACGCCCATCTTCAAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCCG 4157764 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | ||||| || ||| ||||| ||| ||||| | | ||||| |||| Sbjct 4157765 GGGGAATCCCTTCCTTATCCTGGATTTTGGTCTTGACATTATCAATCGTATCCGAGCTTT 4157824 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || | ||||| || || || || | ||| |||||||| |||||||| Sbjct 4157825 CAACCTCCAGGGTAATCGTCTTGCCAGTGAGGGTCTTCACGAAAATCTGCAT 4157876 >seq5054 Length=11143 Score = 87.8 bits (96), Expect = 1e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 9200 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 9141 Query 20007 GGTAATATTTAGCCTT 20022 | || |||||||| Sbjct 9140 GCCCGTAGTTAGCCTT 9125 >seq5369 Length=1591519 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||||||||| | |||| ||||||||| |||||||||||| ||||| || | | Sbjct 1427005 CCTCCTCTCAAACGGAGGACCAGGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTC-GGC 1427063 Query 38151 AAAACACGT-TCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || | | | || || | || || |||||||| || || | || || || | || Sbjct 1427064 AAGGGTCCTACCATCCTCAAGCTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCCGGTGG 1427123 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || || || |||||| |||||| ||| ||||| | | || || || ||||| Sbjct 1427124 GATCCCCTCCTTGTCCTGAATTTTCGCCTTGACATTGTCAATGGTGTCCGAGCTCTCAAC 1427183 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || || |||| ||| || || || ||||||||| Sbjct 1427184 CTCCAGGGTGATTGTCTTCCCTGTCAGGGTCTTAACAAAGATCTGCATG 1427232 >seq790 Length=1848252 Score = 84.2 bits (92), Expect = 1e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 ||||| || ||||||||| || || || || | | | || | || || | ||| Sbjct 1588432 TGAAGGGTCGACTCCTTTTGGATGTTATAGTCCGCAAGAGTGCGACCATCTTCAAGTTGC 1588373 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || ||||| || || | || ||||| | ||| | || || |||||| ||| ||| Sbjct 1588372 TTCCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTTT 1588313 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 || ||||| | || ||||| ||| || || || || || || || || || ||| Sbjct 1588312 GCTTTGACATTATCGATGGTATCAGAACTCTCGACCTCCAAGGTGATGGTCTTCCCAGTC 1588253 Query 38295 AAGGTTTTCACGAATATCTGCATG 38318 ||||||||||| || ||||||||| Sbjct 1588252 AAGGTTTTCACAAAAATCTGCATG 1588229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334876149848555