Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1810 113 4e-20 seq2011 109 5e-19 seq5369 100 2e-16 seq2370 91.5 1e-13 seq3224 87.8 2e-12 seq2214 87.8 2e-12 >seq1810 Length=4673341 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| | || |||||| ||||||| | || |||||| || Sbjct 4157193 AATGCAGATCTTTGTGAAGACCCTTACTGGTAAAACCATCACTCTTGAGGTGGAGAGCTC 4157134 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || |||| | || | ||| ||||| |||||||| || || |||| Sbjct 4157133 GGACACCATAGATAATGTGAAAACCAAGATTCAG-GACAAGGAAGGGATCCCCCCAGACC 4157075 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | || ||||||||||| || | || |||| | || | | ||| |||| Sbjct 4157074 AGCAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAGGATGGGAGGACCCTCGCCGACTACA 4157015 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | || ||||| ||||| || || || | ||||| | || |||||||||| Sbjct 4157014 ACATACAAAAGGAATCGACCCTTCACCTGGTGCTCCGTCTCAGAGGAGGAA 4156964 Score = 109 bits (120), Expect = 5e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142 |||||| || || ||||||||||| || ||||| ||| || |||| ||||| || || Sbjct 4157792 AAAATCCAGGATAAGGAAGGGATTCCCCCGGACCAGCAGAGGCTTATCTTTGCTGGGAAG 4157733 Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202 || | ||||||| || || ||| ||| || |||||||||||||||||||| ||||| Sbjct 4157732 CAGCTTGAAGATGGGCGTACACTGGCCGACTATAATATTCAAAAAGAATCCACCCTACAC 4157673 Query 25203 TTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || | || ||||| |||| Sbjct 4157672 TTGGTTCTCCGTCTCAGAGGTGGAA 4157648 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| | || || || |||| || | || || || || Sbjct 4157649 AATGCAGATTTTCGTGAAGACCCTTACTGGCAAGACCATTACCTTGGAGGTCGAAAGCTC 4157590 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || ||||| |||||| || || ||||||||||| || ||||| Sbjct 4157589 GGACACGATTGATAATGTGAAGACCAAAATCCAGGATAAGGAAGGGATTCCCCCGGACCA 4157530 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || || || | || |||| | || | | |||||||| Sbjct 4157529 GCAGAGGCTCATATTTGCTGGGAAGCAGCTGGAGGATGGGAGGACCCTTGCTGATTACAA 4157470 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||| || |||||||| || || ||||| || | || ||||| |||| Sbjct 4157469 CATTCAGAAGGAATCCACCCTCCACTTAGTCCTCCGCCTCAGAGGTGGAA 4157420 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | || || || |||| || | || || || || Sbjct 4158104 ATGCAAATCTTTGTTAAGACCCTCACTGGAAAGACCATTACCCTTGAGGTCGAAAGCTCA 4158045 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || ||||| ||||||| || || ||||| || || || ||||| Sbjct 4158044 GACACAATTGACAATGTGAAGACAAAAATCCAGGATAAGGAAGGAATCCCCCCAGACCAG 4157985 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| || || || | || |||| | || | | ||||| || Sbjct 4157984 CAGAGGCTCATCTTTGCTGGGAAGCAGCTCGAGGATGGGAGGACCCTTGCTGATTATAAC 4157925 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || ||||||||||| || || || || || | || ||||| |||| Sbjct 4157924 ATCCAGAAAGAATCCACCCTCCACTTGGTCCTCCGCCTCAGAGGTGGAA 4157876 >seq2011 Length=5003947 Score = 109 bits (120), Expect = 5e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| ||||| || ||||| |||| || ||| | || || |||| |||||| || Sbjct 3036902 ATGCAGATATTCGTCAAGACCCTGACAGGGAAAACTATTACGCTCGAGGTGGAGAGCTCA 3036843 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| ||||| |||| | ||| ||||| || ||||| || |||||||| Sbjct 3036842 GACACCATCGACAACGTGAAGGCAAAGATTCAG-GACAAGGAGGGGATCCCGCCTGACCA 3036784 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || ||||| || || || | ||||| | ||||| | | |||||||| Sbjct 3036783 GCAAAGGCTCATCTTTGCAGGAAAGCAGCTTGAAGACGGGCGCACCCTCGCTGATTACAA 3036724 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||| || ||||| ||||| || || | || || ||||| Sbjct 3036723 TATCCAGAAAGAGTCCACCCTTCACCTTGTTCTCAGGCT 3036685 >seq5369 Length=1591519 Score = 100 bits (110), Expect = 2e-16 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || | ||||| | || || ||| || Sbjct 1427231 ATGCAGATCTTTGTTAAGACCCTGACAGGGAAGACAATCACCCTGGAGGTTGAGAGCTCG 1427172 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || | || |||| ||| ||||| || ||||| ||||| ||| Sbjct 1427171 GACACCATTGA--CAATGTCAAGGCGAAAATTCAG-GACAAGGAGGGGATCCCACCGGAC 1427115 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | |||| ||||||||||| || | || |||| | | || | | ||| ||| Sbjct 1427114 CAGCAGAGACTTATCTTTGCCGGCAAGCAGCTTGAGGATGGTAGGACCCTTGCCGACTAC 1427055 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||||||| || ||||| || || | || || | | |||||||| Sbjct 1427054 AACATTCAAAAGGAGTCCACTCTTCACCTGGTCCTCCGTTTGAGAGGAGG 1427005 >seq2370 Length=1017971 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || | ||||| |||| ||||||||||| Sbjct 237399 ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACCCTCGAGGTGGAGTCGTCG 237458 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || || || || ||||| Sbjct 237459 GACACGATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGAATCCCGCCGGACCAG 237518 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || ||||| || ||| | || || | ||||| | | |||||||| Sbjct 237519 CAGCGCCTGATCTTCGCCGGGAAGCAACTCGAGGACGGCCGCACCCTCGCTGATTACAAC 237578 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || ||||| || || Sbjct 237579 ATCCAGAAGGAGTCCACCCTCCA 237601 >seq3224 Length=4215183 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || | || || |||| || ||||| Sbjct 2572937 ATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACGATAACCCTCGAGGTTGAGTCCAGC 2572878 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| ||||| || ||||| || || ||||| Sbjct 2572877 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCCCCGGACCAG 2572818 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 |||||| | || ||||||||||| || | || || | ||||| | | ||| ||||| Sbjct 2572817 CAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACACTCGCCGACTACAAC 2572758 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 || || || || || ||||| || | ||||| |||| Sbjct 2572757 ATCCAGAAGGAGTCGACGCTCCACCTCGTGCTCCGGCT 2572720 >seq2214 Length=9977371 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || | || || |||| || ||||| Sbjct 6800625 ATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACGATAACCCTCGAGGTTGAGTCCAGC 6800566 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| ||||| || ||||| || || ||||| Sbjct 6800565 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCCCCGGACCAG 6800506 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 |||||| | || ||||||||||| || | || || | ||||| | | ||| ||||| Sbjct 6800505 CAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACACTCGCCGACTACAAC 6800446 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 || || || || || ||||| || | ||||| |||| Sbjct 6800445 ATCCAGAAGGAGTCGACGCTCCACCTCGTGCTCCGGCT 6800408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433236080975075