Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq2507 141 1e-28 seq3240 138 1e-27 seq4293 129 7e-25 seq4399 98.7 1e-15 >seq2507 Length=3123735 Score = 141 bits (156), Expect = 1e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 168095 TGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTTCGTGCTTATGACTTTGTG 168154 |||| ||| || |||| | ||||||| || || || || ||||| |||||||| || Sbjct 2652311 TGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTT 2652252 Query 168155 TCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCTATACGAAAAACATC 168214 || ||||| | | ||||| || ||||| || |||||||||||||| || ||||| || Sbjct 2652251 TCCCAGGAGATCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATT 2652192 Query 168215 CTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAACCACATGAAAACTTT 168274 ||| | || ||||| | ||||| |||||||| | ||| || || ||||||||| || Sbjct 2652191 CTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTT 2652132 Query 168275 GTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 |||||||||| || || | || | || |||||||| Sbjct 2652131 ATATTCCCAGAGGAGGTTCTACCCCGTGGAAACGCTCT 2652094 Score = 122 bits (134), Expect = 1e-22 Identities = 148/198 (75%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 167814 AGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAG 167873 |||||||| |||| ||||| | | ||| || ||||||||||| ||||||||| | | | Sbjct 2014071 AGGGTTTC-ATAATTGGACATTGAGCCCATTTCATATGATGGGGGTTGCTGGTGTATTGG 2014013 Query 167874 GCGGTGCATTGCTTT-CT----GCAATCCATGGTGTTACAGTAGAGAATACTCTGTATGA 167928 ||| ||| |||| | || || |||||||||| |||| |||| |||||| | | ||| Sbjct 2014012 GCGCTGC--TGCTCTACTATGCGCTATCCATGGTGCTACAATAGAAAATACTGTATTTGA 2013955 Query 167929 AGATGGTGAGCAAGCAAACACTTTCAAAGCATTTGATACGACTCAGGAAGAGGAAACTTA 167988 ||||||||| ||||| || ||| || ||| | | ||||| | || ||||||| Sbjct 2013954 AGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAAAAACTTA 2013895 Query 167989 TTCCATGGTCACTGCTAA 168006 ||| ||||||||||||| Sbjct 2013894 TTCAGTGGTCACTGCTAA 2013877 >seq3240 Length=2626545 Score = 138 bits (152), Expect = 1e-27 Identities = 127/161 (79%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 166849 GGTATCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAAC 166908 |||||||||||||||||| | ||| | ||||| ||||| |||||||| || |||||||| Sbjct 808435 GGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAAT 808494 Query 166909 TTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTC 166968 |||||||| || | | ||| |||| |||||||| | || |||||||| ||| | | Sbjct 808495 TTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATT 808554 Query 166969 AACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAA 167009 ||||| ||| || ||||||||||| ||||| || ||||| Sbjct 808555 AACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 808595 >seq4293 Length=5823730 Score = 129 bits (142), Expect = 7e-25 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 166891 AACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAAC 166950 ||||| || |||||||| |||||||| | | | ||| |||| |||||||| | || Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 166951 ACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAAT 167010 |||||||| ||| | || ||||| ||| || ||||||||||| ||||| || |||||| Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 167011 GCTCACAACTTCCCTCTGGATCTTGCTGCTG 167041 ||||| ||||||||||| || || ||||||| Sbjct 2155136 GCTCATAACTTCCCTCTAGACCTAGCTGCTG 2155106 >seq4399 Length=3202280 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 166927 GATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGT 166986 ||| |||| |||||||| | || |||||||| ||| | | ||||| | | || ||| Sbjct 214295 GATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATTAACCGCGTTAACCTTGGT 214236 Query 166987 ATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTTGCTGCT 167040 |||||||| ||||| || ||||||||||| ||||||||||| || || |||||| Sbjct 214235 ATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 214182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567108591588000