Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq4939 98.7 1e-15 seq2495 98.7 1e-15 seq3950 96.9 4e-15 seq2214 91.5 2e-13 seq2440 87.8 2e-12 seq546 84.2 2e-11 seq548 82.4 8e-11 >seq4939 Length=4123586 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/108 (81%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||||| | | ||||| Sbjct 3315133 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTGAGAGAGCG 3315192 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTTGC 126371 ||||||| || ||||| |||||||||| | || |||||| |||| Sbjct 3315193 TGGGTTCAAATCCCACTTCTGACAAATTTATTTTCTTATTTTTTTTGC 3315240 >seq2495 Length=1658871 Score = 98.7 bits (108), Expect = 1e-15 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 93395 GAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGC 93454 ||||| ||||||||||| |||||||| || || ||||| || ||| || | ||| || Sbjct 1091380 GAATGTACATTCTCCATAGCAATTTGAAAGCCATAGAATGCTCGAGCCTCGGGGATTTGG 1091321 Query 93455 ACTTC-TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaa 93513 || || || ||||| |||| || | | ||| || ||| |||||||||||||| ||||| Sbjct 1091320 ACATCATTTAGAAA-TCTCGCTGCCAAATTCTCGAGGACAATACCATCGGATGCGGCAAA 1091262 Query 93514 aaaaGCCAATATATGCTTTATAAAATGTTTCTC 93546 || || | | ||| ||||||| || ||||| Sbjct 1091261 GAAGGCGAGCACATGGCTTATAAAGTGCTTCTC 1091229 >seq3950 Length=3597155 Score = 96.9 bits (106), Expect = 4e-15 Identities = 79/95 (83%), Gaps = 6/95 (6%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA--- 126320 |||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 921545 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAGAGAG 921602 Query 126321 -GCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||| || ||||| ||||||| ||||| Sbjct 921603 GGCGTGGGTTCAAATCCCACTTCTGACAATTTATT 921637 >seq2214 Length=9977371 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/92 (83%), Gaps = 6/92 (7%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA--- 126320 |||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 2927966 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAGAGAG 2927909 Query 126321 -GCGTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||||| || ||||| |||||| ||| Sbjct 2927908 GGCGTGGGTTCAAATCCCACTTCTGACATATT 2927877 >seq2440 Length=3503224 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 6/88 (7%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA--- 126320 |||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 1246724 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAG 1246667 Query 126321 -GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 1246666 GGCGTGGGTTCAAATCCCACTTCTGACA 1246639 >seq546 Length=705657 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 6/86 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 200274 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 200331 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 200332 CGTGGGTTCAAATCCCACTTCTGACA 200357 >seq548 Length=2303557 Score = 82.4 bits (90), Expect = 8e-11 Identities = 74/92 (80%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 1231119 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 1231176 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTAT 126356 |||||| || |||||| ||| ||| ||| || Sbjct 1231177 GGGTTCAAATCCCACAGCTGTCAATCTATAAT 1231208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556739647972200