Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2495 132 1e-25 seq4810 93.3 9e-14 seq4609 93.3 9e-14 seq4293 93.3 9e-14 seq3433 93.3 9e-14 seq813 93.3 9e-14 seq797 93.3 9e-14 seq1935 91.5 3e-13 seq1774 91.5 3e-13 seq16600 89.7 1e-12 seq3224 87.8 4e-12 seq524 87.8 4e-12 >seq2495 Length=1658871 Score = 132 bits (146), Expect = 1e-25 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 218587 GATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTGGTT 218646 |||||||| |||||| ||| | ||||||||||| | | |||||| ||||| | || Sbjct 400463 GATGGCCTAAAGCCAGGACAGAGGAAGATCCTCTTCTGCTCTTTCAAGAGGAACTTTGTC 400404 Query 218647 CAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCAC 218706 | ||| || || |||||||||||||| || |||||||| || | ||||||||| Sbjct 400403 AAGGAAGCCAAAGTTGCTCAGTTTTCTGGGTACGTATCCGAGCACTCAGCCTACCATCAT 400344 Query 218707 GGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAAC 218766 |||||||||||||| ||| |||| |||||||||| || || | ||| || || ||| Sbjct 400343 GGTGAGCAGAGTCTTGCTGGTACCATCATAGGCATGGCTCAAGATTTTGTTGGAAGCAAC 400284 Query 218767 AACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCG 218807 || || ||| | || | || | || ||||| || |||| Sbjct 400283 AATATTAACCTTCTTGTACCAAGTGGGCAGTTCGGCACTCG 400243 >seq4810 Length=5543293 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 3278466 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3278407 Query 142563 CCCCAC 142568 |||||| Sbjct 3278406 CCCCAC 3278401 >seq4609 Length=2952995 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 1132938 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1132879 Query 142563 CCCCAC 142568 |||||| Sbjct 1132878 CCCCAC 1132873 >seq4293 Length=5823730 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 655652 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 655593 Query 142563 CCCCAC 142568 |||||| Sbjct 655592 CCCCAC 655587 >seq3433 Length=1155350 Score = 93.3 bits (102), Expect = 9e-14 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 ||| ||||| |||||||||||||||||||| || ||||||| || |||||||||||||| Sbjct 1000706 GATTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 1000647 Query 142560 GAGCCCCAC 142568 ||||||||| Sbjct 1000646 GAGCCCCAC 1000638 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 1005565 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1005506 Query 142564 CCCAC 142568 ||||| Sbjct 1005505 CCCAC 1005501 >seq813 Length=2976281 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 1581283 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1581224 Query 142563 CCCCAC 142568 |||||| Sbjct 1581223 CCCCAC 1581218 >seq797 Length=2373938 Score = 93.3 bits (102), Expect = 9e-14 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || |||||| |||||||||||||||||||| || ||||||| || |||||||||||||| Sbjct 1870391 GAAAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 1870332 Query 142560 GAGCCCCAC 142568 ||||||||| Sbjct 1870331 GAGCCCCAC 1870323 >seq1935 Length=2038111 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 356868 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 356809 Query 142564 CCCAC 142568 ||||| Sbjct 356808 CCCAC 356804 >seq1774 Length=634465 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 252097 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 252038 Query 142564 CCCAC 142568 ||||| Sbjct 252037 CCCAC 252033 >seq16600 Length=750 Score = 89.7 bits (98), Expect = 1e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||| |||| ||||| |||| ||||||| ||||||||||||| ||||| |||||||||| | Sbjct 632 GTCCCTGTAGCGCAGTGGAAAGCGCGTCGGACTTCTAATCCGAAGGTCGCGGGTTCGATC 691 Query 142113 CCCGCCAGAGACGC 142126 |||||||| || || Sbjct 692 CCCGCCAGGGATGC 705 >seq3224 Length=4215183 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| | ||||||||||||||||| Sbjct 3393908 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACATTGTGGTCGTGGGTTCGAG 3393849 Query 142563 CCCCAC 142568 |||||| Sbjct 3393848 CCCCAC 3393843 >seq524 Length=2739 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 365 AGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 424 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 425 CCCCACGTTGGGC 437 Score = 84.2 bits (92), Expect = 4e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||| |||| ||||| |||| ||||||| ||||||||||||| ||||| | |||||||| | Sbjct 875 GTCCCTGTAGCGCAGTGGAAAGCGCGTCGGACTTCTAATCCGAAGGTCGTGGGTTCGATC 934 Query 142113 CCCGCCAGAGA 142123 |||||||| || Sbjct 935 CCCGCCAGGGA 945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027607590787605