Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq1810 98.7 7e-16 seq5369 86.0 4e-12 >seq1810 Length=4673341 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | ||||| | |||||||| || |||||| |||| ||| | Sbjct 4157421 AATGCAAATTTTTGTGAAAACCCTCACGGGCAAGACAATTACCCTGGAGGTCGAAAGTTC 4157362 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || ||| | | || | ||| ||||| || || || || | ||| |||| Sbjct 4157361 GGACACGATTGATAATGTGAAGACGAAAATCCAGGACAAGGAAGGAATCCCTCCGGACCA 4157302 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||| ||||| |||||||| || || || || ||| |||| | || || ||||| Sbjct 4157301 ACAGAGGCTTATTTTTGCTGGGAAGCAGCTCGAGGATGGGCGAACTCTTGCAGACTACAA 4157242 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||| ||||||||||| || |||||| |||| | || | |||||||| Sbjct 4157241 TATCCAGAAGGAATCGACCCTTCATTTGGTGCTTCGGCTGAGAGGAGGA 4157193 >seq5369 Length=1591519 Score = 86.0 bits (94), Expect = 4e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| ||||||||||||||||| ||||| || || || ||| | || | ||||| | Sbjct 1427116 ACCAGCAGAGACTTATCTTTGCCGGCAAGCAGCTTGAGGATGGTAGGACCCTTGCCGACT 1427057 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||| ||||| ||||| || |||||||| |||| | ||||| ||||||| Sbjct 1427056 ACAACATTCAAAAGGAGTCCACTCTTCACCTGGTCCTCCGTTTGAGAGGAGG 1427005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358048833336370