Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1810 107 2e-18 seq790 100 2e-16 seq2011 91.5 1e-13 seq5369 84.2 2e-11 >seq1810 Length=4673341 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || |||| || |||||||||||||| || || ||| || ||||| |||||| Sbjct 4157667 AACCAAGTGTAGGGTGGATTCTTTTTGAATATTATAGTCGGCCAGTGTACGCCCATCTTC 4157726 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 ||| || || ||||| |||| || | ||| |||||||| ||||| ||||| || || Sbjct 4157727 AAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCCGGGGGAATCCCTTCCTTATCCTG 4157786 Query 114293 AATCTTTTGT-TTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTT 114351 || ||| || || | | |||| || || | | ||| || |||| ||| | ||| | Sbjct 4157787 GAT-TTTGGTCTTGACATTATCAATCGTATCCGAGCTTTCAACCTCCAGGGTAATCGTCT 4157845 Query 114352 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || || || || || ||||||||||| Sbjct 4157846 TGCCAGTGAGGGTCTTCACGAAAATCTGCAT 4157876 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||| | || ||||| || || || ||||| || | ||| || ||| || Sbjct 4157212 ACCAAATGAAGGGTCGATTCCTTCTGGATATTGTAGTCTGCAAGAGTTCGCCCATCCTCG 4157271 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || || ||||| | || || | ||||||||||||||| || ||||| ||||| Sbjct 4157272 AGCTGCTTCCCAGCAAAAATAAGCCTCTGTTGGTCCGGAGGGATTCCTTCCTTGTCCTGG 4157331 Query 114294 ATCTTTTGT-TTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 || ||| || || | | |||| ||||| | |||||| |||| ||| | || || Sbjct 4157332 AT-TTTCGTCTTCACATTATCAATCGTGTCCGAACTTTCGACCTCCAGGGTAATTGTCTT 4157390 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| || || ||||| |||||||| ||||| Sbjct 4157391 GCCCGTGAGGGTTTTCACAAAAATTTGCAT 4157420 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 ||||| || | || ||||| || |||||||||||||| | || | ||| || Sbjct 4157440 ACTAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTCCCATCCTCC 4157499 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || || ||||| | ||||| | ||| |||||||| ||||| ||||| || || Sbjct 4157500 AGCTGCTTCCCAGCAAATATGAGCCTCTGCTGGTCCGGGGGAATCCCTTCCTTATCCTGG 4157559 Query 114294 ATCTTTTGTTTTAGCTGT-TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 || ||| || || | | |||| ||||| | | |||||| |||| ||| | || || Sbjct 4157560 AT-TTTGGTCTTCACATTATCAATCGTGTCCGAGCTTTCGACCTCCAAGGTAATGGTCTT 4157618 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| || || || || || ||||||||||| Sbjct 4157619 GCCAGTAAGGGTCTTCACGAAAATCTGCAT 4157648 >seq790 Length=1848252 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || ||||| ||||| || || | ||| ||| |||||||||||| || ||| Sbjct 1588426 GTCGACTCCTTTTGGATGTTATAGTCCGCAAGAGTGCGACCATCTTCAAGTTGCTTCCCA 1588367 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| || ||||| ||||| || || ||||| ||||||| ||| Sbjct 1588366 GCAAAGATCAGCCTCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTTTGCTTTG 1588307 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||| || | ||||| |||| ||| | || || || |||| ||| Sbjct 1588306 ACATTATCGATGGTATCAGAACTCTCGACCTCCAAGGTGATGGTCTTCCCAGTCAAGGTT 1588247 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||||||||||||| Sbjct 1588246 TTCACAAAAATCTGCATG 1588229 >seq2011 Length=5003947 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| | || | ||| || || || ||||||||||||||| Sbjct 3037129 ATACCACCACGGAGACGGAGAACGAGGTGGAGCGTCGACTCCTTCTGAATGTTGTAATCG 3037188 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || || | || || |||||| |||| || | ||| |||||||| Sbjct 3037189 GCTAGGGTGCGGCCGTCCTCCAACTGCTTCCCAGCGAAGATCAGCCTCTGCTGGTCCGGC 3037248 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| || || ||||| || | | || | ||||||| | ||| Sbjct 3037249 GGGATGCCTTCCTTATCTTGGATCTTGGCCTTCACGTTGTCGATCGTGTCGGAGCTCTCG 3037308 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||| ||||| || ||||| || || || |||||||| Sbjct 3037309 ACCTCCAACGTGATCGTCTTGCCAGTAAGAGTCTTCACGAAGATCTGCAT 3037358 >seq5369 Length=1591519 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || |||||||||||||| ||| | || | | ||| ||||| || || || Sbjct 1427035 GTGGACTCCTTTTGAATGTTGTAGTCGGCAAGGGTCCTACCATCCTCAAGCTGCTTGCCG 1427094 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| |||||||| || || || || ||||| ||| || || Sbjct 1427095 GCAAAGATAAGTCTCTGCTGGTCCGGTGGGATCCCCTCCTTGTCCTGAATTTTCGCCTTG 1427154 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | | || || |||| ||| | || || || ||||| || Sbjct 1427155 ACATTGTCAATGGTGTCCGAGCTCTCAACCTCCAGGGTGATTGTCTTCCCTGTCAGGGTC 1427214 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || ||||| ||||||||| || Sbjct 1427215 TTAACAAAGATCTGCATGCCT 1427235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420045279646860