Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4399 390 2e-103 >seq4399 Length=3202280 Score = 390 bits (432), Expect = 2e-103 Identities = 599/844 (71%), Gaps = 20/844 (2%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 ||||||||||||||| || |||| |||||| || |||||| | ||||| || ||||| Sbjct 384583 ATGTACAAGAAGGCGGAGGCCTCCTTCTGGACGGCGGAGGAGGTGGACCTCTCCCAGGAC 384524 Query 42369 ACGGCCGGCTGGGAG----TCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACT 42424 || | ||||||| | || | | || || | |||| ||| | || || Sbjct 384523 ACCCGCCACTGGGAGAATCTAACCTCCGGCGAGCGCCA----TTTCGTCACCCATATCCT 384468 Query 42425 GGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAA 42484 || |||||||||||||||||||| || ||| |||||||| ||| || |||||||||| Sbjct 384467 CGCTTTCTTCGCCGCCTCTGACGGGATCGTCCTCGAGAACCTCGCCGCCCGGTTCATGAA 384408 Query 42485 AGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGT 42544 ||||| ||| || ||||| ||| |||||| ||||||||||| ||||| |||||| | Sbjct 384407 GGAGGTCCAGATCTCCGAGGCCCGCGCCTTCTATGGCTTCCAGATCGCCATTGAGAACAT 384348 Query 42545 GCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAA 42604 ||||| ||| ||||| || ||| | || |||||| ||| ||| |||| | Sbjct 384347 CCACTCCGAGATGTACAGTCTGCTCCTCGAGACCTACATCAAGGACTCCGCCGAGAAGGA 384288 Query 42605 CGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCT 42664 | | |||||| ||| || ||||| | |||||| | |||||||||||||| ||||| | Sbjct 384287 CCGCCTGTTCCGGGCGATCGAGACCGTCCCCTGCGTGAAGAAGAAGGCGGAGTGGGCCAT 384228 Query 42665 CAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGT 42724 | |||||||| | |||| |||||| |||||| || | || ||| || ||| Sbjct 384227 GCAGTGGATCGACGGCTCCGA---GTCGTTCGCGGAGAGGGTGATTGCATTTGCCTGCGT 384171 Query 42725 CGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC 42784 ||||| ||||||||||| || |||| ||||||||||||| ||| || || | Sbjct 384170 GGAGGGGATCTTCTTCTCCGGGAGCTTCTGTGCCATCTTCTGGCTGAAGAAGCGGGGGCT 384111 Query 42785 GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGA 42844 |||||| || ||||||||||||||||| || ||| ||||||||||| || || | || Sbjct 384110 GATGCCGGGGCTCACCTTCTCGAACGAGCTGATCTCGAGGGACGAGGGACTCCACTGCGA 384051 Query 42845 CTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCG 42904 ||| |||||||| | | ||| || |||| || |||| | ||||| || Sbjct 384050 CTTCGCCTGCCTGATCTACTC---CCTCCTCCGGTCGAAGCTCAGCGAGGAGAAAGTGAA 383994 Query 42905 GGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGC-AGTCGCTGCCCG 42963 | | || | ||| || ||||||||||||| |||||| | | || | ||||| ||| Sbjct 383993 GTCGATAGTGCGGGACGCGGTGGAGATCGAGAGGGAGTTTGT-ATGCGACGCGCTG-CCG 383936 Query 42964 TG-TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGAC 43022 || | ||||| || |||||| |||||||||| | ||||||| ||| ||| || ||| Sbjct 383935 TGCGCGCTGGTGGGGATGAACGGCGACCTCATGGGGCAGTACATAGAGTTCGTGGCGGAC 383876 Query 43023 CATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTT 43081 | || || ||| | | |||| | | | ||| || || | ||||||||||| Sbjct 383875 CGGCTGCTGGTGGC-GTTGGGCTGCGGGAAGGTGTACGACGCGGCCAACCCCTTCGACTG 383817 Query 43082 TATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTA 43141 |||||| || ||| || | || ||||||||||| ||||||||| | |||| || || Sbjct 383816 GATGGAGCTGATATCGCTGCAAGGGAAGACCAACTTCTTCGAGAAGAGGGTCGGGGAGTA 383757 Query 43142 CCAG 43145 |||| Sbjct 383756 CCAG 383753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944133747202800