Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq2214 93.3 3e-14 seq5369 86.0 5e-12 seq2011 86.0 5e-12 seq3224 84.2 2e-11 >seq2214 Length=9977371 Score = 93.3 bits (102), Expect = 3e-14 Identities = 91/115 (79%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || |||| ||| || |||||||| || ||||||||| ||||||||||| || Sbjct 3956422 CCTCCCCTGAGCCTCAGGACAAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCCGC- 3956364 Query 33961 AATTGTC-GCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 || ||| | | || ||||||||||| || ||||||||||| | |||||| ||| Sbjct 3956363 AAGAGTCCGGCCATCTTCCAATTGCTTTCCAGCAAATATCAGTCTCTGCTGGTCC 3956309 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 ||||| ||||| || || ||||| ||||||||| |||||||| || || | | || Sbjct 6800408 AGCCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTGCGG 6800467 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| |||||||||||||| || || |||||||| ||| || | | ||| Sbjct 6800468 CCGTCCTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCCGGGGGGATCCCCTCC 6800527 Query 34030 TTGTCC 34035 |||||| Sbjct 6800528 TTGTCC 6800533 >seq5369 Length=1591519 Score = 86.0 bits (94), Expect = 5e-12 Identities = 108/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||||| || || ||||| ||||| ||| |||||| ||||||||||| || | | Sbjct 1427005 CCTCCTCTCAAACGGAGGACCAGGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTC-GGC 1427063 Query 33961 AATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || ||| || | || || | |||||||||||||| || || | |||||| ||| | Sbjct 1427064 AAGGGTC-CTACCATCCTCAAGCTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCCGGTG 1427122 Query 34019 GCACGCTCTCTTTGTCCATAATTTT 34043 | | | ||| |||||| |||||| Sbjct 1427123 GGATCCCCTCCTTGTCCTGAATTTT 1427147 >seq2011 Length=5003947 Score = 86.0 bits (94), Expect = 5e-12 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||| |||| |||||||| ||| || || ||||||||| || || ||||| ||| Sbjct 3036904 CCTCCTCTGAGCCTCAGCACCAAATGCAGGGTCGACTCCTTCTGGATATTATAATCCGCC 3036963 Query 33961 AATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | ||| || | || || | ||||| |||||||| ||||| |||||||||||| | Sbjct 3036964 AGG-GTC-CTGCCATCATCGAGCTGCTTTCCGGCAAAGATCAGCCGCTGCTGATCCGGAG 3037021 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGAT-TC 34076 | | | ||| || || ||| || ||| | | ||| | | |||| || | || Sbjct 3037022 GAATACCCTCCTTATCTTGAATCTTGGCCTTCA-CGTTGTCAATCGTGTCAG-AGCTCTC 3037079 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | || | ||| || || || |||||||| || ||||| ||||| ||||| Sbjct 3037080 GACCTCCAACGTGATCGTCTTGCCGGTTAGAGTCTTCACGAAGATCTGCAT 3037130 >seq3224 Length=4215183 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 ||||| ||||| || || ||||| ||||||||| |||||||| || || | | || Sbjct 2572720 AGCCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTGCGG 2572779 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| |||||||||||||| || || |||||||| ||| || | | ||| Sbjct 2572780 CCGTCCTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCCGGGGGGATCCCCTCC 2572839 Query 34030 TTGTCC 34035 |||||| Sbjct 2572840 TTGTCC 2572845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396978173758810