Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq4399 120 7e-22 >seq4399 Length=3202280 Score = 120 bits (132), Expect = 7e-22 Identities = 282/424 (67%), Gaps = 4/424 (1%) Strand=Plus/Minus Query 243316 TGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAA 243375 ||||| || || || | || |||||||| ||||| |||||||| |||||| ||| Sbjct 384175 TGCGTGGAGGGGATCTTCTTCTCCGGGAGCTTCTGTGCCATCTTCTGGCTGAAGAAGCGG 384116 Query 243376 GGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCAC 243435 || ||||||| || ||| | || |||||| | ||| | |||||||| || ||| Sbjct 384115 GGGCTGATGCCGGGGCTCACCTTCTCGAACGAGCTGATCTCGAGGGACGAGGGACTCCAC 384056 Query 243436 CAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTA--CCATTCGAAACGG 243493 | |||| || || || || |||| | ||||| | | |||| | Sbjct 384055 TGCGACTTCGCCTGCCTGATCTACTCCCTCCTCCGGTCGAAGCTCAGCGAGGAGAAA--G 383998 Query 243494 TCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTC 243553 | || || | || || || || | ||| | ||| || | |||||||| | | Sbjct 383997 TGAAGTCGATAGTGCGGGACGCGGTGGAGATCGAGAGGGAGTTTGTATGCGACGCGCTGC 383938 Query 243554 CATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCG 243613 | ||| ||| | || |||||| || |||||||| |||||||| || ||||| || | Sbjct 383937 CGTGCGCGCTGGTGGGGATGAACGGCGACCTCATGGGGCAGTACATAGAGTTCGTGGCGG 383878 Query 243614 ACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCT 243673 |||| | | | ||| | || | | ||| |||||| || | |||||||| | || Sbjct 383877 ACCGGCTGCTGGTGGCGTTGGGCTGCGGGAAGGTGTACGACGCGGCCAACCCCTTCGACT 383818 Query 243674 TTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATT 243733 |||||||| || ||||| |||||||| || ||||||||||| ||| | ||| | || | Sbjct 383817 GGATGGAGCTGATATCGCTGCAAGGGAAGACCAACTTCTTCGAGAAGAGGGTCGGGGAGT 383758 Query 243734 ATCA 243737 | || Sbjct 383757 ACCA 383754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102634056036750