Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq4399 141 1e-28 seq2214 95.1 1e-14 >seq4399 Length=3202280 Score = 141 bits (156), Expect = 1e-28 Identities = 358/532 (67%), Gaps = 23/532 (4%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT--CTCC 125815 ||| ||||| |||| ||||||||||||||| |||||||| | || || ||||| |||| Sbjct 383756 GTACTCCCCGACCCTCTTCTCGAAGAAGTTGGTCTTCCCTTGCA-GC-GATATCAGCTCC 383813 Query 125816 ATAAAATCAAATGGGTTCTTTGAGT--TCCAAATTGTTGGCACCCCAATCTGTTTGAGGA 125873 || | || || ||||| | || | || || | || ||||| | || | Sbjct 383814 ATCCAGTCGAAGGGGTTGGCCGCGTCGTACACCTTCCCG-CAGCCCAA-CGCCACCAGCA 383871 Query 125874 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGT 125933 | || |||| ||| |||| ||||||| ||| || |||||| || | || Sbjct 383872 GCCGGTCCGCCACGAACTCTATGTACTGCCCCATGAGGTCGCCGTTCATCCCCACCAGCG 383931 Query 125934 TACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGG 125993 || || |||||||| | | ||| || |||| || ||||| || |||||||| || | Sbjct 383932 CGCACGGCAGCGCGTCGCATACAAACTCCCTCTCGATCTCCACCGCGTCCCGCACTATCG 383991 Query 125994 CGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC---CACGGCAA 126050 | | | ||| | | | || | | | || || || || || ||| | Sbjct 383992 ACTTCACTTTCTCCTCGCTGAG-CT-TCGACCGGAGGAGGGAGTAGATCAGGCA-GGCGA 384048 Query 126051 ACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCA 126110 | || |||||| |||||||| | ||||| || || ||||||||| || || |||| Sbjct 384049 AGTCGCAGTGGAGTCCCTCGTCCCTCGAGATCAGCTCGTTCGAGAAGGTGAGCCCCGGCA 384108 Query 126111 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCT 126170 | || ||||||||||||| |||||| || ||||| || || ||||||||||| |||| Sbjct 384109 TCAGCCCCCGCTTCTTCAGCCAGAAGATGGCACAGAAGCTCCCGGAGAAGAAGATCCCCT 384168 Query 126171 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTG---TGTCAAACC 126227 |||| || || || |||| | | ||| || || ||||| | ||| | || Sbjct 384169 CCACGCAGGCAAATGCAATCACCCTCTCCGCGAA------CGACTCGGAGCCGTCGATCC 384222 Query 126228 ACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 ||| ||| ||||||| |||||| |||| | || |||||||||| |||||| Sbjct 384223 ACTGCATGGCCCACTCCGCCTTCTTCTTCACGCAGGGGACGGTCTCGATCGC 384274 >seq2214 Length=9977371 Score = 95.1 bits (104), Expect = 1e-14 Identities = 191/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 10877 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGC 10936 || |||||||||||||| | ||| ||||| ||||| || || | ||||||||| | || Sbjct 4795695 AACCCATCCATCTCAGTAAGGAGCTGATTAATGGTCTGCTCCCTCTCATCATTCCC--GC 4795752 Query 10937 ATAC--CACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 10994 | | |||||| | | ||| | || || || ||||| ||||| |||||||| || | Sbjct 4795753 CTCCGAGACCCGCCCCTCTCTGCCTTCCCACAGCATCAATCTCATCAATGAAAACAATGC 4795812 Query 10995 ACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCC 11053 |||| | || || ||| ||||| | ||| | ||| ||| || || || ||| Sbjct 4795813 ACGG-AGCCTTCGACTTGGCCTTCTCAAACAAATCCCTGACCCTCGAAGCTCCAACTCCC 4795871 Query 11054 ACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 11113 || |||| || || || | | ||| | ||| || ||| || || | ||| || Sbjct 4795872 ACGAACAACTCTACGAACTCCGAGGCTGCACAAGAGAAGAATGGAACCCCAGCTTCGCCG 4795931 Query 11114 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGT 11152 || | || ||||| || ||||||||||| || || ||| Sbjct 4795932 GCAACTGCCCGGGCTAGAAGGGTCTTCCCGGTTCCGGGT 4795970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597223638257400