Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1810 100 2e-16 seq5369 98.7 7e-16 >seq1810 Length=4673341 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || |||||||||||||| ||| ||| | ||| | || || | || Sbjct 4156990 TGAAGGGTCGATTCCTTTTGTATGTTGTAGTCGGCGAGGGTCCTCCCATCCTCAAGCTGC 4157049 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| || | |||| | ||| ||||| || || ||||||||||| ||| ||| Sbjct 4157050 TTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATCCCTTCCTTGTCCTGAATCTTG 4157109 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 |||| ||| | ||||| || || | || || || | || ||||||||||| || Sbjct 4157110 GTTTTCACATTATCTATGGTGTCCGAGCTCTCCACCTCAAGAGTGATGGTTTTACCAGTA 4157169 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || ||||| Sbjct 4157170 AGGGTCTTCACAAAGATCTGCAT 4157192 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||||||||| || || || || || ||||| || ||| ||| | | || || Sbjct 4157212 ACCAAATGAAGGGTCGATTCCTTCTGGATATTGTAGTCTGCAAGAGTTCGCCCATCCTCG 4157271 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || ||||| | || | | ||||||||| || |||||||||||||| Sbjct 4157272 AGCTGCTTCCCAGCAAAAATAAGCCTCTGTTGGTCCGGAGGGATTCCTTCCTTGTCCTGG 4157331 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| | || ||| | || || || || | |||| || || | |||||| || || Sbjct 4157332 ATTTTCGTCTTCACATTATCAATCGTGTCCGAACTTTCGACCTCCAGGGTAATTGTCTTG 4157391 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| |||||||||||||| Sbjct 4157392 CCCGTGAGGGTTTTCACAAAAATTTGCAT 4157420 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 ||||| || ||||| || || || || ||||||||||| || | ||| | || || Sbjct 4157440 ACTAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTCCCATCCTCC 4157499 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || ||||| |||| | | ||| ||||| ||||| |||||||| || Sbjct 4157500 AGCTGCTTCCCAGCAAATATGAGCCTCTGCTGGTCCGGGGGAATCCCTTCCTTATCCTGG 4157559 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 |||||| | || ||| | || || || || |||| || || ||||||||||| || Sbjct 4157560 ATTTTGGTCTTCACATTATCAATCGTGTCCGAGCTTTCGACCTCCAAGGTAATGGTCTTG 4157619 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || ||||| ||||| Sbjct 4157620 CCAGTAAGGGTCTTCACGAAAATCTGCAT 4157648 >seq5369 Length=1591519 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || ||||| || || || || ||||| || || ||| |||| |||| || Sbjct 1427479 ACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCAGCAAGAGTTCTTCCGTCCTCG 1427538 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| || ||||| | ||||| | ||| ||||| || |||||||||||||| | Sbjct 1427539 AGTTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCCGGGGGGATTCCTTCCTTGTCTTGA 1427598 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || ||| | || || ||||| | ||||| || | || ||||| ||| Sbjct 1427599 ATCTTGGCCTTAACATTGTCAATTGTATCAGAGCTCTCTACCTCGAGCGTGATGGTCTTA 1427658 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || |||||||||||||| Sbjct 1427659 CCGGTGAGGGTCTTCACAAAAATTTGCAT 1427687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357316188780425