Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2011 116 3e-21 seq4810 100 3e-16 seq1932 100 3e-16 seq1810 86.0 6e-12 >seq2011 Length=5003947 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | |||||||| ||| | |||||| || || ||||| |||||||||||||| Sbjct 3036901 ATCCCTCCTCTGAGCCTCAGCACCAAATGCAGGGTCGACTCCTTCTGGATATTATAATCC 3036960 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | || ||||| || | |||| || ||||| ||||| Sbjct 3036961 GCCAGGGTCCTGCCATCATCGAGCTGCTTTCCGGCAAAGATCAGCCGCTGCTGATCCGGA 3037020 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || ||||||||||| || || | || | || | ||||| || ||| Sbjct 3037021 GGAATACCCTCCTTATCTTGAATCTTGGCCTTCA-CGTTGTCAATCGTGTCAGAGCTCTC 3037079 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || | || | ||| |||||||||||||| || || || || ||||| Sbjct 3037080 GACCTCCAACGTGATCGTCTTGCCGGTTAGAGTCTTCACGAAGATCTGCAT 3037130 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | | || || || || || || ||||| ||||| || |||||| Sbjct 3037357 ATACCGCCGCGGAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCG 3037416 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || ||||| || || || ||| | |||| | ||||||||||| Sbjct 3037417 GCTAGGGTGCGGCCGTCCTCCAACTGCTTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGG 3037476 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || |||||||| |||||||| || || |||| || | || | ||||| ||| ||| Sbjct 3037477 GGGATGCCTTCCTTATCTTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAACTCTC 3037535 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||||||||| | ||| |||||||| | || || || || || |||||| Sbjct 3037536 GACTTCGAGAGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCATC 3037587 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || || || ||||| || ||||| || || || |||||| Sbjct 3037129 ATACCACCACGGAGACGGAGAACGAGGTGGAGCGTCGACTCCTTCTGAATGTTGTAATCG 3037188 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || ||||| || || || ||| | |||| | |||||||||||| Sbjct 3037189 GCTAGGGTGCGGCCGTCCTCCAACTGCTTCCCAGCGAAGATCAGCCTCTGCTGGTCCGGC 3037248 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || |||||||| |||||||| || || || | || | || | |||||||| ||| Sbjct 3037249 GGGATGCCTTCCTTATCTTGGATCTTGGCCTTCA-CGTTGTCGATCGTGTCGGAGCTCTC 3037307 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || | || | ||| ||||| || ||||| || || || || ||||| Sbjct 3037308 GACCTCCAACGTGATCGTCTTGCCAGTAAGAGTCTTCACGAAGATCTGCAT 3037358 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | |||| | || || ||||| || || ||||| ||||| || || ||| Sbjct 3037585 ATCCCTCCCCTCAGCCGGAGGACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCG 3037644 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || || | || || || ||| | ||||| || |||||||||||| Sbjct 3037645 GCCAATGTCCGGCCGTCCTCAAGCTGCTTCCCGGCGAAGATCAAGCGCTGCTGGTCCGGC 3037704 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| || || || || || |||| || | || | || ||||| ||| Sbjct 3037705 GGGATCCCTTCCTTGTCCTGGATCTTAGCCTTGA-CGTTGTCGATCGTATCGGAGCTCTC 3037763 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| |||||||| | || |||||||| || ||||| || || || ||||| Sbjct 3037764 GACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 3037814 >seq4810 Length=5543293 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||||| | || || || || || || ||||| ||||| || || ||| Sbjct 517994 ATGCCTCCACGGAGCCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 517935 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || || || ||| | |||| | |||||||||||| Sbjct 517934 GCCAAGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCCGGC 517875 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || |||||||| || || || || || |||| || | || | ||||||||| ||| Sbjct 517874 GGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTC 517816 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| |||||||| | || |||||||| || || || || || || |||||| Sbjct 517815 GACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATC 517764 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || |||||||| || | | || || || || ||||| ||||| ||||| || || ||| Sbjct 518222 ATACCTCCGCGAAGACGGAGGACAAGGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCG 518163 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| ||| || | || || || ||| | |||| | |||||||||||| Sbjct 518162 GCCAAGGTTCGGCCATCCTCGAGCTGCTTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGC 518103 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || || || || || || ||| | || | ||||||||| |||| Sbjct 518102 GGGATCCCCTCCTTGTCCTGGATCTTAGCTTTCACATTGTCGATGGTGTCGGAGCTCTCG 518043 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || |||||||| ||||| || ||||| || ||||| Sbjct 518042 ACCTCAAGCGTGATGGTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 517993 >seq1932 Length=4064500 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | |||||| | ||| || || || ||||| ||||| ||||| ||||| ||| Sbjct 3415033 ATCCCTCCCCTGAGCCTGAGCACAAGGTGGAGGGTTGACTCCTTCTGGATGTTATAGTCG 3415092 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || || | || || || ||| | || | || |||||||||||| Sbjct 3415093 GCGAGGGTCCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGCCGCTGCTGGTCCGGC 3415152 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || || || || || || |||| || | || | |||||||| ||| Sbjct 3415153 GGGATCCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGTTATCGATCGTGTCGGAGCTCTC 3415211 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| ||||| || | || |||||||| || ||||| || || || |||||| Sbjct 3415212 GACCTCGAGCGTGATAGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCATC 3415263 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||||| | ||| || || || || || ||||| ||||| ||||| || Sbjct 3414577 ATGCCTCCCCTCAGCCTGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTATAGTCC 3414636 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || ||| || | || || || ||| |||||| | ||||||||||| Sbjct 3414637 GCGAGTGTGCGGCCATCCTCGAGCTGCTTCCCGGCGAATATCAGCCTCTGCTGGTCCGGG 3414696 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || || || || || |||| || | |||||||| ||| Sbjct 3414697 GGAATGCCTTCCTTGTCCTGGATCTTCGCCTTGACATTGTCAATCGTGTCGGAGCTCTCC 3414756 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || || ||||| || || || || || || ||||| Sbjct 3414757 ACCTCGAGCGTGATGGTCTTCCCGGTAAGGGTCTTCACGAAGATCTGCAT 3414806 >seq1810 Length=4673341 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | ||| | | ||| || || || || ||||||||||| || || || ||| Sbjct 4156963 ATTCCTCCTCTGAGACGGAGCACCAGGTGAAGGGTCGATTCCTTTTGTATGTTGTAGTCG 4157022 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | ||| || | || || || || | |||| | |||||||| || Sbjct 4157023 GCGAGGGTCCTCCCATCCTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGG 4157082 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || || ||||| || ||| | |||| |||||| || ||| Sbjct 4157083 GGGATCCCTTCCTTGTCCTGAATCTTGGTTTTCACATTATCTATGGTGTCCGAGCTCTCC 4157142 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | ||||| || || || || || ||||| || ||||| Sbjct 4157143 ACCTCAAGAGTGATGGTTTTACCAGTAAGGGTCTTCACAAAGATCTGCAT 4157192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451904861053800