Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq4293 132 6e-26 seq3240 129 7e-25 seq4399 102 1e-16 seq2507 102 1e-16 seq6319 89.7 6e-13 >seq4293 Length=5823730 Score = 132 bits (146), Expect = 6e-26 Identities = 120/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 7533 CAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAA 7592 ||||||| ||||| ||||||||||| ||||||||||| || ||||| |||||||| |||| Sbjct 2155106 CAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAA 2155165 Query 7593 GACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGA 7652 | ||| ||||| || | || ||||| || || | ||||||||||||| ||||| | Sbjct 2155166 GGTTAGCGCGGTTAAGAATATCAGCCCAAGTATTTATTACACGACCTTGACTATCAACTA 2155225 Query 7653 TGGACTGGTTGAAGTTGAAACCGTTGAGGTT 7683 | |||||||| |||||||| || ||||| Sbjct 2155226 CAAATTGGTTGAAATTGAAACCATTTAGGTT 2155256 >seq3240 Length=2626545 Score = 129 bits (142), Expect = 7e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 7565 TTACGCTCGTGCATGACTTCCATGCCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTG 7624 ||||| || ||||| |||||||| ||||| ||| ||||| | | || ||||| || Sbjct 808595 TTACGTTCATGCATAACTTCCATACCAAGGTTAGCGCGGTTAATAATATCAGCCCAAGTA 808536 Query 7625 TTCAGGACACGACCTTGACCATCAATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTG 7684 || | ||||||||||||| ||||| | || |||||||| |||||||| || |||||| Sbjct 808535 TTAATTACACGACCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTG 808476 Query 7685 AATGCCATGGTGCTAACACCAAGAGCAGTGAACCAGATGCC 7725 || ||||| ||||| | ||| | |||||| |||||||| || Sbjct 808475 AAAGCCATAGTGCTGATACCTAAAGCAGTAAACCAGATACC 808435 >seq4399 Length=3202280 Score = 102 bits (112), Expect = 1e-16 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 7534 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAG 7593 |||||| ||||| ||||||||||| ||||||||||| || ||||| |||||||| ||||| Sbjct 214182 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 214241 Query 7594 ACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAA 7649 | | ||||| | | || ||||| || || | ||||||||||||| ||||| Sbjct 214242 GTTAACGCGGTTAATAATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAA 214297 >seq2507 Length=3123735 Score = 102 bits (112), Expect = 1e-16 Identities = 141/197 (72%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 6569 TTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTGAAAGTA 6628 ||||| ||||||| ||||| || | || |||| || || | ||| || ||| ||| Sbjct 2013877 TTAGCAGTGACCACTGAATAAGTTTTTTCAGCTTGAGTTGGGTTAAAAGCACGGAATGTA 2013936 Query 6629 TTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATAGCACAG 6688 |||| |||||||||||||| | |||||| |||| |||||||| || ||||| || Sbjct 2013937 TTTGCACCATCACCATCTTCAAATACAGTATTTTCTATTGTAGCACCATGGATAGCGCAT 2013996 Query 6689 AGCAATGCTCCA---CCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGCGTC 6745 || | || || || || | ||| || || |||||||||||||| ||| | | ||| Sbjct 2013997 AGTAGAGCAGCAGCGCCCAATACACCAGCAACCCCCATCATATGAAATGGGCTCAATGTC 2014056 Query 6746 CAGTTGTGGAAGCCCTG 6762 || || || || || || Sbjct 2014057 CAATTATGAAACCCTTG 2014073 >seq6319 Length=5966559 Score = 89.7 bits (98), Expect = 6e-13 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 7803 CAAAGTAT--CCGTGAGCAGCAACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATA 7860 ||||| || || |||||||| ||||| || || || ||||| ||||| ||||| | || Sbjct 1421087 CAAAGAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGCCCGAATCTGTA 1421146 Query 7861 ACCATAGTTCTGGGACTCAGACTCAGTGGTTTCACGAACCAGAGAAGAGGTTACAAGCGA 7920 ||| | || | ||| || |||||||| | | || | ||||||||| | || Sbjct 1421147 ACCTTCATTAGCATATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGA 1421206 Query 7921 ACCATGCATCGCACTGAACAGAGAACCACCAAAGACAC 7958 ||||||||| |||||||| || ||||| || || |||| Sbjct 1421207 ACCATGCATAGCACTGAATAGGGAACCGCCGAATACAC 1421244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621989448973200