Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4399 138 1e-27 seq2214 96.9 4e-15 seq3953 86.0 8e-12 >seq4399 Length=3202280 Score = 138 bits (152), Expect = 1e-27 Identities = 164/222 (74%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| |||||||| | ||||| || || ||||||||| || || ||||| || || Sbjct 384056 GTGGAGTCCCTCGTCCCTCGAGATCAGCTCGTTCGAGAAGGTGAGCCCCGGCATCAGCCC 384115 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 ||||||||||| |||||| || ||||| || || |||||||||||||||||||| || Sbjct 384116 CCGCTTCTTCAGCCAGAAGATGGCACAGAAGCTCCCGGAGAAGAAGATCCCCTCCACGCA 384175 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 || || |||| | | ||| || || || ||| || | ||||| ||| || Sbjct 384176 GGCAAATGCAATCACCCTCTCCGCGAACGACTCGGA---GCCGTCGATCCACTGCATGGC 384232 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 ||||| ||||| |||| | || |||||||||| |||||| Sbjct 384233 CCACTCCGCCTTCTTCTTCACGCAGGGGACGGTCTCGATCGC 384274 >seq2214 Length=9977371 Score = 96.9 bits (106), Expect = 4e-15 Identities = 192/280 (69%), Gaps = 6/280 (2%) Strand=Plus/Plus Query 12791 GAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGG 12850 ||| |||||||||||||| | ||| ||||| ||||| || || | ||||||||| | | Sbjct 4795694 GAACCCATCCATCTCAGTAAGGAGCTGATTAATGGTCTGCTCCCTCTCATCATTCCC--G 4795751 Query 12851 CATAC--CACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA 12908 | | | |||||| | | ||| | || || || ||||| || ||||||||||| || Sbjct 4795752 CCTCCGAGACCCGCCCCTCTCTGCCTTCCCACAGCATCAATCTCATCAATGAAAACAATG 4795811 Query 12909 CACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 12967 ||||| | || || ||| ||||| | ||| | || ||| || || || || Sbjct 4795812 CACGG-AGCCTTCGACTTGGCCTTCTCAAACAAATCCCTGACCCTCGAAGCTCCAACTCC 4795870 Query 12968 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACC 13027 ||| |||| ||| || || | | ||| | ||| || ||| || || | ||| || Sbjct 4795871 CACGAACAACTCTACGAACTCCGAGGCTGCACAAGAGAAGAATGGAACCCCAGCTTCGCC 4795930 Query 13028 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 13067 || | || ||||| || ||||||||||| || || ||| Sbjct 4795931 GGCAACTGCCCGGGCTAGAAGGGTCTTCCCGGTTCCGGGT 4795970 >seq3953 Length=3923179 Score = 86.0 bits (94), Expect = 8e-12 Identities = 191/284 (67%), Gaps = 6/284 (2%) Strand=Plus/Minus Query 12705 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 12764 ||||| || || || || | | ||| ||| |||||||| ||||| || || || Sbjct 3433016 TCAAATCGGCCAGGCCGTAATAAGGCAGAGTCGAGGATATCGGCACGGTTAGTTGCAGCA 3432957 Query 12765 ATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 12824 || |||| ||| || || | ||||| ||||||||||| |||||||| ||||| | Sbjct 3432956 ATAACAATGATACCAGTGTTTCCCTCGAATCCATCCATCTCTGTCAAGAGCTGATTAAGA 3432897 Query 12825 GTTTGTTCACGTTCATCATT--CGCGGGC-ATACCACCCGCACTGCGTTGCTTACCGACG 12881 || || || | ||||||||| | | | | || ||| | | | |||| || || Sbjct 3432896 GTCTGCTCCCTTTCATCATTTCCTCCGCCAATTCCA---GTTCCCCTTTGCCGCCCAACA 3432840 Query 12882 GCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATA 12941 || |||||||| |||| || || || || || ||| || ||| | || | | Sbjct 3432839 GCATCAATTTCATCAACAAACACAATGCAAGGGGCATTCTCTTTGGCTTTCTTGAACAGA 3432780 Query 12942 TCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 || || ||||| ||||| ||||| ||||||||||| || || Sbjct 3432779 TCACGAACTCTAGACGCACCAACACCAACAAACATCTCAACGAA 3432736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613373723839800