Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4399 145 1e-29 seq2495 84.2 3e-11 >seq4399 Length=3202280 Score = 145 bits (160), Expect = 1e-29 Identities = 541/836 (65%), Gaps = 23/836 (3%) Strand=Plus/Plus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 |||||||||| ||||||||||| || | || ||||| ||||| | |||| |||| Sbjct 383770 TCTTCTCGAAGAAGTTGGTCTTCCCTTGCAGCGATATCAGCTCCATCCAGTCGAAGGGGT 383829 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 | | ||| || |||| | || | ||| |||||| || ||| ||||| || | Sbjct 383830 TGGCCGCGTCGTACACCTTCCCGCAGCCCAACGCCACCAGCAGCCGGTCCGCCACGAACT 383889 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGC-CTAACGGGGAGCGCTTCC 159826 | ||||| | ||| | || | ||| ||||||| |||| | |||| ||||| || Sbjct 383890 CTATGTACTGCCCCATGAGGTCGCCGTTCATCCCCACCAGCGCGCACGGC-AGCGCGTCG 383948 Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTAC 159886 | | ||||||| |||| ||||| ||||| || ||| ||| | ||| ||| | Sbjct 383949 CATACAAACTCCCTCTCGATCTCCACCGCGTCCCGCACTATCGACTT--CACTTTCT--C 384004 Query 159887 CCCG----GCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAG 159942 | || |||| | | | || | | |||| || || ||||||||||| || Sbjct 384005 CTCGCTGAGCTTCGACCGGAGGAGGGAGTAGATCAGG---CAGGCGAAGTCGCAGTGGAG 384061 Query 159943 TCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGG 160002 ||||||||||| ||||| | |||||| || | | |||| |||||||| | ||| ||| Sbjct 384062 TCCCTCGTCCCTCGAGATCAGCTCGTTCGAGAAGGTGAGCCCCGGCATCAGCCCCCGCTT 384121 Query 160003 TTTGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCCGCAA 160061 || ||||| || |||| | || |||| ||| || ||||||||||||||| |||| Sbjct 384122 CTTCAGCCAGAAGATGG-CACAGAAGCTCCCGGAGAAGAAGATCCCCTCCACGCAGGCAA 384180 Query 160062 ACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATT 160121 | || | | |||||| | || || | || | | | | ||||| ||||||| | Sbjct 384181 ATGCAATCACCCTCTCCGCGAACGA---CTCGGAGCCGTCGATCCACTGCATGGCCCACT 384237 Query 160122 CAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCT 160181 | |||||||| | ||| || | | ||||| || |||| | ||||| ||| Sbjct 384238 CCGCCTTCTTCTTCACGCAGGGGACGGTCTCGATCGCCCGGAACAGGCGGTCCTTCTCGG 384297 Query 160182 TCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGA 160241 |||||||| || | | ||| |||||| || | ||| | || || | Sbjct 384298 CGGAGTCCTTGATGTAGGTCTCGAGGAGCAGACTGTACATCTCGGAGTGGATGTTCTCAA 384357 Query 160242 TGGCCATCTGAAAGTTGTAGAAATATGTCGCCTC-CAGATACTGCACCTCCTGTGTGAAC 160300 |||| ||||| ||| ||||| ||||| |||| ||| ||||||| ||||| Sbjct 384358 TGGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCGGAGAT-CTGGACCTCCTTCATGAAC 384416 Query 160301 CTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGA 160360 | | || || | || | |||||| | ||| || |||||||| | | || Sbjct 384417 CGGGCGGCGAGGTTCTCGAGGACGATCCCGTCAGAGGCGGCGAAGAAAGCGAGGATATGG 384476 Query 160361 GAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCC 160420 | || |||||| | |||| | | | || || |||||||| ||| |||| Sbjct 384477 GTGACGAAATGGCGCTCGCCGGAGGTTAG---ATTCTCCCAGTGGCGGGTGTCCTGGGAG 384533 Query 160421 AAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCA 160476 | || ||||| ||||| |||| || |||| || | |||||||| |||| Sbjct 384534 AGGTCCACCTCCTCCGCCGTCCAGAAGGAGGCCTCCGCCTTCTTGTACATTTCCCA 384589 >seq2495 Length=1658871 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 || ||||| |||||||||||||| || ||||| |||||||| || | ||| || || | Sbjct 1092004 AGAAGGCAAGCAAAGTCGCAGTGGAGGCCCTCATCCCGAGAAATAAGCTCATTTGAGAAT 1091945 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGC 160020 | ||||||||||| | || | | ||||||||| |||||||| Sbjct 1091944 GTTAGGCCCGGCATCAGTCCCCTCTTTTTGAGCCAGAAAATGGC 1091901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794982204046800