Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq5554 145 3e-29 seq5370 145 3e-29 seq5369 107 8e-18 seq1810 104 9e-17 seq666 104 9e-17 seq790 98.7 4e-15 seq4293 96.9 1e-14 seq1287 93.3 2e-13 seq2011 87.8 7e-12 >seq5554 Length=4157884 Score = 145 bits (160), Expect = 3e-29 Identities = 143/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 ||||| ||||||||||| ||||| |||||| |||| |||| || | || | || Sbjct 322832 GTTCTCACTAAAATGAAGGAAACTGCAGAATCATATCTTGGGAAAACAATATCTAAAGCT 322891 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || || |||||||| ||||||||||| |||||||| |||||||||| |||||||| ||| Sbjct 322892 GTTATCACTGTTCCAGCTTATTTCAACGATGCACAGAGGCAAGCAACAAAAGATGCTGGA 322951 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 | ||||||||| || |||| | |||| || ||||| || || || ||||| || || Sbjct 322952 CGAATTGCTGGTCTAGATGTCCAGAGAATCATCAATGAGCCCACTGCTGCTGCCCTCTCA 323011 Query 451445 TATGG 451449 ||||| Sbjct 323012 TATGG 323016 >seq5370 Length=1890397 Score = 145 bits (160), Expect = 3e-29 Identities = 143/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 ||||| ||||||||||| ||||| |||||| |||| |||| || | || | || Sbjct 1737526 GTTCTCACTAAAATGAAGGAAACTGCAGAATCATATCTTGGGAAAACAATATCTAAAGCT 1737467 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || || |||||||| ||||||||||| |||||||| |||||||||| |||||||| ||| Sbjct 1737466 GTTATCACTGTTCCAGCTTATTTCAACGATGCACAGAGGCAAGCAACAAAAGATGCTGGA 1737407 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 | ||||||||| || |||| | |||| || ||||| || || || ||||| || || Sbjct 1737406 CGAATTGCTGGTCTAGATGTCCAGAGAATCATCAATGAGCCCACTGCTGCTGCCCTCTCA 1737347 Query 451445 TATGG 451449 ||||| Sbjct 1737346 TATGG 1737342 >seq5369 Length=1591519 Score = 107 bits (118), Expect = 8e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || || || ||||| || || || || || || || ||| Sbjct 1427687 ATGCAAATTTTTGTGAAGACCCTCACCGGTAAGACCATCACGCTCGAGGTAGAGAGCTCT 1427628 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | |||| || |||||||| ||||||||||| || || || || Sbjct 1427627 GATACAATTGACAATGTTAAGGCCAAGATTCAAGACAAGGAAGGAATCCCCCCGGACCAG 1427568 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || ||||| | ||||| ||||| || || ||||||||| | || || ||||| Sbjct 1427567 CAGAGGTTGATTTTTGCTGGGAAGCAACTCGAGGACGGAAGAACTCTTGCTGACTATAAC 1427508 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || || ||||| || Sbjct 1427507 ATTCAGAAGGAGTCCACCCTCCACTTGGT 1427479 >seq1810 Length=4673341 Score = 104 bits (114), Expect = 9e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| || || || ||||| || || ||||| || || |||||| || Sbjct 4157877 AATGCAGATTTTCGTGAAGACCCTCACTGGCAAGACGATTACCCTGGAGGTTGAAAGCTC 4157818 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| ||||| | | || ||||| || ||||||||||| ||||| || || || Sbjct 4157817 GGATACGATTGATAATGTCAAGACCAAAATCCAGGATAAGGAAGGGATTCCCCCGGACCA 4157758 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || | | || || | ||||| || ||||||||||| | || |||| || ||||| Sbjct 4157757 GCAGAGGCTTATCTTTGCTGGGAAGCAGCTTGAAGATGGGCGTACACTGGCCGACTATAA 4157698 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 |||| | || || | || || ||||| || Sbjct 4157697 TATTCAAAAAGAATCCACCCTACACTTGGT 4157668 Score = 98.7 bits (108), Expect = 4e-15 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| || ||||| || || || || || ||||| || || || ||| || Sbjct 4157421 AATGCAAATTTTTGTGAAAACCCTCACGGGCAAGACAATTACCCTGGAGGTCGAAAGTTC 4157362 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||||| | | || ||||| || || ||||||||||| ||||| || || Sbjct 4157361 GGACACGATTGATAATGTGAAGACGAAAATCCAGGACAAGGAAGGAATCCCTCCGGACCA 4157302 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| | | ||||| | ||||| || || || ||||| ||||| | || || || || Sbjct 4157301 ACAGAGGCTTATTTTTGCTGGGAAGCAGCTCGAGGATGGGCGAACTCTTGCAGACTACAA 4157242 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGATAAATACA 391282 ||| | ||||| | || ||||| || || | | ||||||||| ||| || Sbjct 4157241 TATCCAGAAGGAATCGACCCTTCATTTGGTGCTTCGGCTGAGAGGAGGAATGCA 4157188 Score = 87.8 bits (96), Expect = 7e-12 Identities = 164/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| || || || ||||| || || ||||| | || || ||| || Sbjct 4157649 AATGCAGATTTTCGTGAAGACCCTTACTGGCAAGACCATTACCTTGGAGGTCGAAAGCTC 4157590 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||||| | | || ||||| || ||||||||||| ||||| || || || Sbjct 4157589 GGACACGATTGATAATGTGAAGACCAAAATCCAGGATAAGGAAGGGATTCCCCCGGACCA 4157530 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || | | || || | ||||| || || || ||||| || || | || ||||| || Sbjct 4157529 GCAGAGGCTCATATTTGCTGGGAAGCAGCTGGAGGATGGGAGGACCCTTGCTGATTACAA 4157470 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGATAAATACAtttttt 391288 ||| | ||||| | || || |||||||| | | || ||||| ||| || |||| Sbjct 4157469 CATTCAGAAGGAATCCACCCTCCACTTAGTCCTCCGCCTCAGAGGTGGAATGCAAATTTT 4157410 Query 391289 t 391289 | Sbjct 4157409 T 4157409 Score = 84.2 bits (92), Expect = 9e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || ||||| || || ||||| || || ||||| ||||| || ||| || Sbjct 4158104 ATGCAAATCTTTGTTAAGACCCTCACTGGAAAGACCATTACCCTTGAGGTCGAAAGCTCA 4158045 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | || |||||| || |||||||||||||| || || || || Sbjct 4158044 GACACAATTGACAATGTGAAGACAAAAATCCAGGATAAGGAAGGAATCCCCCCAGACCAG 4157985 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || || | ||||| || || || ||||| || || | || |||||||| Sbjct 4157984 CAGAGGCTCATCTTTGCTGGGAAGCAGCTCGAGGATGGGAGGACCCTTGCTGATTATAAC 4157925 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | || || | || || ||||| || Sbjct 4157924 ATCCAGAAAGAATCCACCCTCCACTTGGT 4157896 >seq666 Length=4378875 Score = 104 bits (114), Expect = 9e-17 Identities = 339/520 (65%), Gaps = 10/520 (2%) Strand=Plus/Minus Query 451976 CTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCT 452035 || || |||||| | ||||||||||| || ||||| ||||| ||||| ||||| ||||| Sbjct 132967 CTGTGCAAGAGCATCAATCCTGATGAGGCCGTTGCTTATGGAGCTGCTGTTCAGGCAGCG 132908 Query 452036 ATTCTAACAGGTTCAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCT 452095 ||| | | || | |||| || | || ||||||| | ||||| || ||| Sbjct 132907 ATTTTGAGTGGCGAGGGCAATGAGAAGGTGCAGGACCTTCTGTTGCTTGATGTCACTCCT 132848 Query 452096 CTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGA--A 452153 |||||||| || | || || |||||||| ||||||| | ||| | |||| | Sbjct 132847 CTATCTCTCGGGTTGGAGACTGCTGGTGGGGTGATGACGGTCCTTATT--CCCAGGAACA 132790 Query 452154 CTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGT--GATAACCAACCAGG 452211 | ||||||| || ||| | | | | | | | | | || || || || || Sbjct 132789 CAACTATTCCGACCAAGAAGGAGC--AGGTCTTCTCGACCTACTCCGACAATCAGCCTGG 132732 Query 452212 TGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGG 452271 || || || || | |||||| || | || | ||| || || || || || || Sbjct 132731 AGTGCTGATCCAGGTCTATGAAGGTGAGAGGGCGAGGACGCGTGACAACAACTTGCTGGG 132672 Query 452272 AGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTAC 452331 | ||| || || |||||||||| ||||||||| |||||| || | | Sbjct 132671 CAAGTTTGAGCTCTCGGGCATTCCTCCTGCTCCAAGGGGAGTTCCTCAGATCAACGTGTG 132612 Query 452332 CTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAA 452391 || || | ||||||||||| ||||||||||| ||| | || ||| | |||| Sbjct 132611 CTTCGACATAGATGCAAATGGCATTCTTAATGTCTCTGCCGAGGACAAAACCACTGG-CC 132553 Query 452392 ATCAGAA-AAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAA 452450 | |||| |||||||| || || || || || | | | || || || || || || | Sbjct 132552 AGAAGAACAAAATTACCATCACCAACGACAAGGGCAGGCTCTCCAAGGAGGAGATCGAGA 132493 Query 452451 AAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGA 452490 | ||||| | || ||||| || | ||||| ||| ||||| Sbjct 132492 ATATGGTCCAGGAGGCAGAGAAGTACAAGGCTGAAGATGA 132453 >seq790 Length=1848252 Score = 98.7 bits (108), Expect = 4e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| ||||||| || || || || | || || || ||| Sbjct 1588230 ATGCAGATTTTTGTGAAAACCTTGACTGGGAAGACCATCACCTTGGAGGTCGAGAGTTCT 1588289 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| || | | ||| ||| ||||| || ||||| || ||||| || ||||| Sbjct 1588290 GATACCATCGATAATGTCAAAGCAAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAG 1588349 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || || | ||||| |||||||||||||| | ||| | ||||| ||||| Sbjct 1588350 CAGAGGCTGATCTTTGCTGGGAAGCAACTTGAAGATGGTCGCACTCTTGCGGACTATAAC 1588409 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 || | ||||| | || |||||| Sbjct 1588410 ATCCAAAAGGAGTCGACCCTTCAC 1588433 Score = 89.7 bits (98), Expect = 2e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || |||||||| ||||| ||||| || || || || | || || || || Sbjct 1587546 ATGCAGATCTTCGTTAAGACACTCACTGGCAAGACCATCACCTTGGAGGTGGAGAGCTCG 1587605 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || || ||||| || ||||||||||| || || || || Sbjct 1587606 GACACCATTGATAATGTGAAGGCCAAGATTCAGGACAAGGAAGGAATCCCCCCGGACCAG 1587665 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || ||||| | || || |||||||| || ||||| ||| | || || ||||| Sbjct 1587666 CAGAGGTTGATTTTTGCTGGCAAGCAACTTGAGGACGGAAGGACTCTTGCTGACTATAAC 1587725 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || || ||||| || Sbjct 1587726 ATCCAGAAGGAGTCCACCCTCCACTTGGT 1587754 >seq4293 Length=5823730 Score = 96.9 bits (106), Expect = 1e-14 Identities = 179/260 (69%), Gaps = 12/260 (5%) Strand=Plus/Plus Query 451340 GCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTA 451399 ||||| ||||||||||| || |||| |||||||||||||| ||| ||||| ||| || Sbjct 5800056 GCTTACTTCAATGATGCCCAGAGGCAGGCAACTAAAGATGCCGGAACCATTGCCGGTCTA 5800115 Query 451400 AATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAA 451459 |||||| | | || || || || || || || || || |||| ||||| |||| Sbjct 5800116 AATGTTGCTAGGATCATCAACGAGCCCACGGCGGCAGCAATAGCCTATGGTCTAG----- 5800170 Query 451460 TCAAAAGAAA-CAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGA 451518 | |||||| | ||| | ||||| | || ||||| | ||||| || || || Sbjct 5800171 --ACAAGAAAGGGGGAGAGACCAATATCCTCGTCTTTGACCTCGGTGGTGGGACCTTCGA 5800228 Query 451519 TACTTCTGTA--CTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGAT 451576 | || ||| || | || || |||| || || || || |||||| ||||| || Sbjct 5800229 T--GTCAGTATTCTGACGATCGACAATGGCGTGTTCGAGGTCTTGGCAACGAATGGAGAC 5800286 Query 451577 ACTCATCTAGGAGGTGAAGA 451596 ||||| || ||||| || || Sbjct 5800287 ACTCACCTGGGAGGAGAGGA 5800306 >seq1287 Length=5097827 Score = 93.3 bits (102), Expect = 2e-13 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 || || || ||||| ||||||||| ||||| || ||||||||||||||| || | ||| Sbjct 1660414 ACAGTGCCAGCTTACTTCAATGATTCACAAAGGACAGCAACTAAAGATGCGGGTCGGATT 1660473 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 || ||||| | ||||| || || || ||||||||||| || || | || || ||||| Sbjct 1660474 GCCGGTTTGGAAGTTCTCCGGATCATCAATGAACCTACTGCTGCATCCCTGGCTTATGG 1660532 Score = 91.5 bits (100), Expect = 6e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 450913 AGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAA 450972 || ||| || || || ||||| || || | ||| ||||| ||||||||| | || || | Sbjct 3962752 AGTAATCGGTATCGACCTTGGTACAACTTATTCGTGTGTGGGTGTTTACAAGAACGGTCA 3962693 Query 450973 TGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTAC 451032 ||||||||||||||| |||||||||||| ||| ||| || || ||||| ||| || Sbjct 3962692 TGTAGAAATTATAGCGAATGACCAAGGAAACAGAATTACCCCATCGTGGGTTGCTTTCAC 3962633 Query 451033 GGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA 451065 ||| || ||||| | || | ||||| || Sbjct 3962632 TGATAGTGAGAGACTGATCGGTGAGGCTGCCAA 3962600 >seq2011 Length=5003947 Score = 87.8 bits (96), Expect = 7e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 391134 AAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAA 391193 || |||||||||||||| || |||||||| ||||| || || | || || | || || Sbjct 3037046 AAGATTCAAGATAAGGAGGGTATTCCTCCGGATCAGCAGCGGCTGATCTTTGCCGGAAAG 3036987 Query 391194 CAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCAC 391253 || || || ||||| || || |||||||||||||||| | ||||| | || || || Sbjct 3036986 CAGCTCGATGATGGCAGGACCCTGGCGGATTATAATATCCAGAAGGAGTCGACCCTGCAT 3036927 Query 391254 TTAGTATTAAGACTGAGAGGA 391274 || || | || || |||||| Sbjct 3036926 TTGGTGCTGAGGCTCAGAGGA 3036906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975277811709740