Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4399 122 1e-22 seq3953 118 1e-21 seq2229 100 4e-16 seq2214 96.9 4e-15 >seq4399 Length=3202280 Score = 122 bits (134), Expect = 1e-22 Identities = 201/288 (70%), Gaps = 3/288 (1%) Strand=Plus/Minus Query 102033 GAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTC 102092 |||| |||||| ||| | || | || || ||||| || |||||| | | || Sbjct 384340 GAGATGTACAGTCTGCTCCTCGAGACCTACATCAAGGACTCCGCCGAGAAGGACCGCCTG 384281 Query 102093 TTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGG 102152 || || ||| | || || || || | | ||||| ||||| ||||| ||| ||||| Sbjct 384280 TTCCGGGCGATCGAGACCGTCCCCTGCGTGAAGAAGAAGGCGGAGTGGGCCATGCAGTGG 384221 Query 102153 TTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGT 102212 | || | || || | || || ||| | | | |||||||| || || ||||| Sbjct 384220 ATCGA--CGGCTCCGAGT-CGTTCGCGGAGAGGGTGATTGCATTTGCCTGCGTGGAGGGG 384164 Query 102213 ATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCA 102272 ||||||||||| || |||||| || || | ||||| |||||||| || || ||||| Sbjct 384163 ATCTTCTTCTCCGGGAGCTTCTGTGCCATCTTCTGGCTGAAGAAGCGGGGGCTGATGCCG 384104 Query 102273 GGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 || ||| |||||| |||||||| ||||| | ||||||||||||||| Sbjct 384103 GGGCTCACCTTCTCGAACGAGCTGATCTCGAGGGACGAGGGACTCCAC 384056 >seq3953 Length=3923179 Score = 118 bits (130), Expect = 1e-21 Identities = 230/335 (69%), Gaps = 6/335 (2%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975 || |||||||| | || || ||||| || || |||| ||||| |||||| | | | Sbjct 3432986 TCGAGGATATCGGCACGGTTAGTTGCAGCAATAACAATGATACCAGTGTTTCCCT--CGA 3432929 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035 | ||||||||||||||||| ||||| |||| ||| || |||| ||||||||| || Sbjct 3432928 ATCCATCCATCTCTGTCAAGAGCTGATTAAGAGTCTGCTCCCTTTCATCATTTCCTCCGC 3432869 Query 16036 TACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATG 16095 | |||| | | |||| || || |||||||| ||||||| || || ||||| | Sbjct 3432868 CAATTCCAGTTCCCCTTTGCCGCCCAACAGCATCAATTTCATCAACAAACACAATGCAAG 3432809 Query 16096 GTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAA 16155 | ||| || || | || ||||| || || | || || |||||||||| Sbjct 3432808 GGGCATTCTCTTTGGCTTTCTTGAACAGATCACGAACTCTAGACGCACCAACACCAACAA 3432749 Query 16156 ACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCA 16214 ||||||| || || | | ||| | || | || || || ||| || |||||| ||| Sbjct 3432748 ACATCTCAACGAACTCAGAACCGG-AGATGGAGAAAAATGGAACACCAGCTTCACCAGCA 3432690 Query 16215 ATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || || |||||||||||| || || || || || Sbjct 3432689 ATTGCCTTGGCGAGAAGAGTTTTTCCAGTTCCAGG 3432655 >seq2229 Length=2552774 Score = 100 bits (110), Expect = 4e-16 Identities = 82/100 (82%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 13721 GAATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAACCATGAATC 13780 ||| || || ||| |||||||||||||||||||| ||| ||||||||||||||||| || Sbjct 51660 GAACTATCGAGAGGCTTACGGACTGTTTGCATGCAACGGGATCCTCTTCAACCATGAGTC 51601 Query 13781 ACCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTACC 13820 ||| | ||||| | ||||||||||| |||||| ||| Sbjct 51600 ACCTCGTCGAGGCGAGAACTTTGTGACCCGGAAGATAACC 51561 >seq2214 Length=9977371 Score = 96.9 bits (106), Expect = 4e-15 Identities = 191/279 (68%), Gaps = 8/279 (3%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || ||||||||||| || | ||||| ||||| || || |||| ||||||||| | || Sbjct 4795695 AACCCATCCATCTCAGTAAGGAGCTGATTAATGGTCTGCTCCCTCTCATCATTCCC--GC 4795752 Query 16035 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 | | | || || | | ||| ||||||| |||||||||||||||||||| || |||| Sbjct 4795753 CTCCGAGACCCGCCCCTCTCTGCCTTCCCACAGCATCAATCTCATCAATGAAAACAATGC 4795812 Query 16093 ATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 16150 | || |||| | || ||||| | ||||| || | | || || || || Sbjct 4795813 ACGG--AGCCTTCGACTTGGCCTTCTCAAACAAATCCCTGACCCTCGAAGCTCCAACTCC 4795870 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 16210 || |||| ||| || || | | ||| | ||| || ||| || || || ||| || Sbjct 4795871 CACGAACAACTCTACGAACTCCGAGGCTGCACAAGAGAAGAATGGAACCCCAGCTTCGCC 4795930 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 |||| || ||||| ||||| ||||| || || || || Sbjct 4795931 GGCAACTGCCCGGGCTAGAAGGGTCTTCCCGGTTCCGGG 4795969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620607349731600