Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq4399 95.1 1e-14 seq2214 87.8 2e-12 >seq4399 Length=3202280 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || |||| ||||| ||||| || |||| || || ||||| || || Sbjct 384057 TGGAGTCCCTCGTCCCTCGAGATCAGCTCGTTCGAGAAGGTGAGCCCCGGCATCAGCCCC 384116 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||||||| || || || || |||||||| |||||||| ||| Sbjct 384117 CGCTTCTTCAGCCAGAAGATGGCACAGAAGCTCCCGGAGAAGAAGATCCCCTCCACGCAG 384176 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAG-GTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 || || || | | | ||| || || | ||| || ||||| ||||| | ||||| Sbjct 384177 GCAAATGCAATCACCCTCTCCGCGAACGACTCG-GAGCCGTCGATCCACTGCATGGCCCA 384235 Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 | ||||| || | ||||||||| || | ||| || Sbjct 384236 CTCCGCCTTCTTCTTCACGCAGGGGACGGTCTCGATCGC 384274 >seq2214 Length=9977371 Score = 87.8 bits (96), Expect = 2e-12 Identities = 267/408 (65%), Gaps = 6/408 (1%) Strand=Plus/Plus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651 ||| || ||||| || || || ||||| || || ||||| || | |||||| || | Sbjct 4795694 GAACCCATCCATCTCAGTAAGGAGCTGATTAATGGTCTGCTCCCTCTCATCATTCCCG-- 4795751 Query 11652 CATACCA--CCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATA 11709 | | | | || ||| | || | | || ||||| ||||||||||| ||||| || || Sbjct 4795752 CCTCCGAGACCCGCCCCTCTCTGCCTTCCCACAGCATCAATCTCATCAATGAAAACAATG 4795811 Query 11710 CACGGTTGGTTGGCACGT-GCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACC 11768 ||||| || | || | |||| || || | || | || | | |||||||| || Sbjct 4795812 CACGGAGCCTTCG-ACTTGGCCTTCTCAAACAAATCCCTGACCCTCGAAGCTCCAACTCC 4795870 Query 11769 TACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACC 11828 ||||||| ||| ||||| | | ||| | ||| | ||| ||||| || || || Sbjct 4795871 CACGAACAACTCTACGAACTCCGAGGCTGCACAAGAGAAGAATGGAACCCCAGCTTCGCC 4795930 Query 11829 AGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCC 11888 || | || || || || || ||||| || || || |||| ||| | | |||| || Sbjct 4795931 GGCAACTGCCCGGGCTAGAAGGGTCTTCCCGGTTCCGGGTGGGCCAACCAAAAGGCATCC 4795990 Query 11889 ACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAAT 11948 |||||||| || || | ||| ||||| ||||| | ||| || |||| Sbjct 4795991 TTTCGGGATCTTTGCTCCCAAAGCCGTGTACTTGTCAGGGTTCTTCAAGAAATCAACAAC 4796050 Query 11949 CTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCCTCAACATCGGTGAA 11996 ||| | |||||| |||||| ||| ||| ||||||| | ||| Sbjct 4796051 CTCTTGGAGTTCCAACTTGGCCTGATCGGCACCTGCAACATCAGCGAA 4796098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588847860909000