Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3953 127 2e-24 seq4399 113 5e-20 seq2214 98.7 1e-15 seq281 93.3 5e-14 seq2495 84.2 3e-11 seq2229 84.2 3e-11 >seq3953 Length=3923179 Score = 127 bits (140), Expect = 2e-24 Identities = 232/335 (69%), Gaps = 6/335 (2%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9282 || |||||||| | || || || || || || |||| ||||| |||||| | | | Sbjct 3432986 TCGAGGATATCGGCACGGTTAGTTGCAGCAATAACAATGATACCAGTGTTTCCCT--CGA 3432929 Query 9283 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9342 | ||||||||||||||||| || || |||| ||| || |||| ||||||||| || Sbjct 3432928 ATCCATCCATCTCTGTCAAGAGCTGATTAAGAGTCTGCTCCCTTTCATCATTTCCTCCGC 3432869 Query 9343 TACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATG 9402 | |||| | | |||| || || |||||||| ||||||| || ||||| || | Sbjct 3432868 CAATTCCAGTTCCCCTTTGCCGCCCAACAGCATCAATTTCATCAACAAACACAATGCAAG 3432809 Query 9403 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAA 9462 | ||| || ||| | | || ||||| ||||| || || || |||||||||| Sbjct 3432808 GGGCATTCTCTTTGGCTTTCTTGAACAGATCACGAACTCTAGACGCACCAACACCAACAA 3432749 Query 9463 ACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCA 9521 ||||||| || || | | ||| | || | || || || ||| || |||||| ||| Sbjct 3432748 ACATCTCAACGAACTCAGAACCGG-AGATGGAGAAAAATGGAACACCAGCTTCACCAGCA 3432690 Query 9522 ATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || || |||||||||||| || || || || || Sbjct 3432689 ATTGCCTTGGCGAGAAGAGTTTTTCCAGTTCCAGG 3432655 >seq4399 Length=3202280 Score = 113 bits (124), Expect = 5e-20 Identities = 145/199 (73%), Gaps = 7/199 (4%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| ||||| || | || || || || || |||||| || || ||||| || || Sbjct 384056 GTGGAGTCCCTCGTCCCTCGAGATCAGCTCGTTCGAGAAGGTGAGCCCCGGCATCAGCCC 384115 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 ||||||||||| ||| | || || ||||| ||||||||||||||| |||||||| || Sbjct 384116 CCGCTTCTTCAGCCAGAAGATGGCACAGAAGCTCCCGGAGAAGAAGATCCCCTCCACGCA 384175 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGA--GCGAGACTTTGTGTCAAACCATTTCATT 117462 ||||| |||| | | ||| ||||| || ||| | ||| | ||| | ||| Sbjct 384176 GGCAAATGCAATCACCCTCTCCGCGAACGACTCGGAGCC-----GTCGATCCACTGCATG 384230 Query 117463 GCCCATTTCGCCTTCTTCT 117481 ||||| | ||||||||||| Sbjct 384231 GCCCACTCCGCCTTCTTCT 384249 >seq2214 Length=9977371 Score = 98.7 bits (108), Expect = 1e-15 Identities = 189/277 (68%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || ||||||||||| || | || || ||||| || || |||| ||||||||| | || Sbjct 4795695 AACCCATCCATCTCAGTAAGGAGCTGATTAATGGTCTGCTCCCTCTCATCATTCCC--GC 4795752 Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 | | | || || | | ||| ||||||| |||||||||||||||||||| ||||| | Sbjct 4795753 CTCCGAGACCCGCCCCTCTCTGCCTTCCCACAGCATCAATCTCATCAATGAAAACAATGC 4795812 Query 9400 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 | || || ||| | ||||| | ||| | ||||| || || || || | Sbjct 4795813 ACGGAGCCTTCGACTTGGCCTTCTCAAACAAATCCCTGACCCTCGAAGCTCCAACTCCCA 4795872 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9519 | |||| ||| || || | | ||| | ||| || ||| || || || ||| || | Sbjct 4795873 CGAACAACTCTACGAACTCCGAGGCTGCACAAGAGAAGAATGGAACCCCAGCTTCGCCGG 4795932 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 ||| || ||||| ||||| ||||| || || || || Sbjct 4795933 CAACTGCCCGGGCTAGAAGGGTCTTCCCGGTTCCGGG 4795969 >seq281 Length=1258992 Score = 93.3 bits (102), Expect = 5e-14 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 107226 ||| || || ||||| || ||||| ||||| || || | ||| ||| ||||| | || Sbjct 240179 CTGGGGCCTCGGTGTTCCTGCATTAAAGAGCGTAGGAGATGCATGAGTGAACCACCGCTG 240238 Query 107227 GGACATCTTGTCGTATGTCTCCAA-GACAGAATCAATGTCTTCCCCGTGGATGCCGATGG 107285 |||||| | | || || || || |||||| |||||||| ||| ||||| || | | Sbjct 240239 AGACATCATATGATAGGT-TCTAATGACAGAGTCAATGTCATCCTTATGGATTCCAACAG 240297 Query 107286 CCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA- 107344 | || | ||| ||||||| |||||| | |||| || | || | || | || |||| Sbjct 240298 CAACCCTCATCAACATGTGCTGGGGTCTCTCCACGACCTTCCCCTGGACC--TTCAAGAG 240355 Query 107345 -TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 || | ||||||||||||| | ||||||||| || | || |||| || Sbjct 240356 GTAAGACCTCTCAAGGGTTTTAAACCCAAAGTAATCATAGTCGAAGTCTCG 240406 >seq2495 Length=1658871 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || |||||| |||||||| || |||||||| ||||||||||| |||||| Sbjct 1091995 GCAAAGTCGCAGTGGAGGCCCTCATCCCGAGAAATAAGCTCATTTGAGAATGTTAGGCCC 1091936 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAA 117374 ||||| || |||| ||| || | ||| |||| || ||||| Sbjct 1091935 GGCATCAGTCCCCTCTTTTTGAGCCAGAAAATGGCACAGAA 1091895 >seq2229 Length=2552774 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 7029 AATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAATCA 7088 || || || ||| |||||||||||||||| ||| ||| ||||||||||||||||| ||| Sbjct 51659 AACTATCGAGAGGCTTACGGACTGTTTGCATGCAACGGGATCCTCTTCAACCATGAGTCA 51600 Query 7089 CCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTACC 7127 || | ||||| | ||||||| || |||||| ||| Sbjct 51599 CCTCGTCGAGGCGAGAACTTTGTGACCCGGAAGATAACC 51561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589852442302200