Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq4293 138 1e-27 seq3240 132 6e-26 seq4399 105 8e-18 seq2507 96.9 4e-15 seq16698 91.5 2e-13 seq2500 91.5 2e-13 seq6319 84.2 3e-11 >seq4293 Length=5823730 Score = 138 bits (152), Expect = 1e-27 Identities = 121/151 (80%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 180585 AACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAAC 180644 ||||| || |||||||| |||||||| | | ||||| ||||||||||||| | || Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 180645 ACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAAT 180704 |||||||| || | || ||||||||| || ||||||||||||||||| || |||||| Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 180705 GCTCACAACTTCCCACTTGACCTGGCAGCTG 180735 ||||| |||||||| || ||||| || |||| Sbjct 2155136 GCTCATAACTTCCCTCTAGACCTAGCTGCTG 2155106 >seq3240 Length=2626545 Score = 132 bits (146), Expect = 6e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 180543 GGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAAC 180602 || |||||||| ||||| | || | ||||| ||||| |||||||| || |||||||| Sbjct 808435 GGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAAT 808494 Query 180603 TTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAACACTTGGGCAGACGTACTC 180662 |||||||| || | ||||| ||||||||||||| | || |||||||| || | | Sbjct 808495 TTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATT 808554 Query 180663 AACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAA 180703 ||||||||| || ||||||||||||||||| || ||||| Sbjct 808555 AACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 808595 >seq4399 Length=3202280 Score = 105 bits (116), Expect = 8e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 180619 TTGATGGTCAAGGTCGTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGG 180678 ||||| ||||||||||||| | || |||||||| || | | ||||||| | || | Sbjct 214297 TTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATTAACCGCGTTAACCTTG 214238 Query 180679 GTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTGGCAGCT 180734 |||||||||||||||| || ||||||||||| |||||||| || ||||| || ||| Sbjct 214237 GTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 214182 >seq2507 Length=3123735 Score = 96.9 bits (106), Expect = 4e-15 Identities = 141/199 (71%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 181935 TCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGTGTTGCTGGTATCC 181994 |||| || |||||||||||||| | | || || ||||||||||| ||||||||| | Sbjct 2014075 TCCAAGGGTTTCATAATTGGACATTGAGCCCATTTCATATGATGGGGGTTGCTGGTGTAT 2014016 Query 181995 TGGG---TGGCGCATTACTCTCTGCAATTCACGGTGTGACCGTGGAGAATACTCTGTATC 182051 |||| || || |||| | || || || |||| || | || |||||| | | | Sbjct 2014015 TGGGCGCTGCTGCTCTACTATGCGCTATCCATGGTGCTACAATAGAAAATACTGTATTTG 2013956 Query 182052 AAGACGGTGACCAAGCAAATACTTTCAAAGCATTCGATTCAACTCAAGAAGAAGAAACCT 182111 |||| ||||| |||||||| ||| || || | ||||||||| ||| |||| | Sbjct 2013955 AAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAAAAACTT 2013896 Query 182112 ATTCAATGGTTACAGCGAA 182130 ||||| |||| || || || Sbjct 2013895 ATTCAGTGGTCACTGCTAA 2013877 >seq16698 Length=814 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||||||| Sbjct 811 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCAAAT 752 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 751 CCTACTTGGGGAG 739 >seq2500 Length=93118 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| || |||||||||||||| ||| Sbjct 57183 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGACTGGTCGTAGGTTCGAAT 57242 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 57243 CCTACTTGGGGAG 57255 >seq6319 Length=5966559 Score = 84.2 bits (92), Expect = 3e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 180310 GTGTCTTCGGCGGTTCACTGTTCTCCGCAATGCACGGTTCACTGGTTACCTCTTCACTGG 180369 |||| ||||||||||| || ||| || ||||| ||||| |||| |||||| || Sbjct 1421244 GTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGA 1421185 Query 180370 TTCGTGAAACCACTGAAACTGAGTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAG 180429 | | |||||||| |||| ||| | || | ||||||| || || ||||| |||| Sbjct 1421184 TCAGGGAAACCACAGAAAATGAATATGCTAATGAAGGTTACAGATTCGGGCAAGAGGAAG 1421125 Query 180430 AGACCTACAACATCGTTGCTGCACATGGATA 180460 | || || || ||||| ||||| ||||| || Sbjct 1421124 AAACTTATAATATCGTAGCTGCTCATGGTTA 1421094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610264000546200