Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Punica_20granatum_20[genbank_20GCA_5F002201585.1_202017-06-20] 17,405 sequences; 296,383,220 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq2507 105 8e-18 seq4293 102 9e-17 seq3240 96.9 4e-15 seq6103 91.5 2e-13 seq4399 84.2 3e-11 >seq2507 Length=3123735 Score = 105 bits (116), Expect = 8e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 171366 GTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCA 171425 || ||||| || || ||||| | || || || || || || || ||||| | ||||| Sbjct 2652290 GTCGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAGATCCGTGCAGCG 2652231 Query 171426 GAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGA 171485 ||||| || || || || ||||||||||| || ||||| || | || |||||||| | Sbjct 2652230 GAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGT 2652171 Query 171486 GCATGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTA 171545 || |||||| | | || || || ||||| ||| | |||||||||| || || || Sbjct 2652170 GCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCAGAGGAGGTTCTA 2652111 Query 171546 CCAAGAGGTAACGCACTTTAA 171566 || | || ||||| |||||| Sbjct 2652110 CCCCGTGGAAACGCTCTTTAA 2652090 >seq4293 Length=5823730 Score = 102 bits (112), Expect = 9e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 170239 AACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCTAACGGAAAAATCGTCCCA 170298 ||| | ||||||||||| || ||||||| || |||||| | | || | | Sbjct 2155256 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCGTGTAATAAAT 2155197 Query 170299 ACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGTTATGCATGAAAGAAAT 170358 || |||| |||| |||| ||| | || ||| | ||||||||||||||||||||| | ||| Sbjct 2155196 ACTTGGGCTGATATTCTTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2155137 Query 170359 GCACACAACTTCCCACTAGACCTAGC 170384 || || |||||||| ||||||||||| Sbjct 2155136 GCTCATAACTTCCCTCTAGACCTAGC 2155111 >seq3240 Length=2626545 Score = 96.9 bits (106), Expect = 4e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 170195 TATGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACTTGAATGGTTTCA 170254 || || | ||||| || || | |||||| |||| ||||| |||||| | |||||||||| Sbjct 808433 TAGGTATCTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCA 808492 Query 170255 ACTTTAACCAATCAGTTGTTGATGCTAACGGAAAAATCGTCCCAACATGGGGTGATGTTC 170314 | || |||||||| || |||||| | | || | | || |||| |||| || Sbjct 808493 ATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTA 808552 Query 170315 TAAACAGAGCAAACTTGGGTATGGAAGTTATGCATGAA 170352 | ||| | || ||| | ||||||||||||||||||||| Sbjct 808553 TTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAA 808590 >seq6103 Length=2400612 Score = 91.5 bits (100), Expect = 2e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 153216 GGATACTATGGAACCATTACACCCCCAGTCATACAGCGAAACGTTCTTGAGAATCCTAGT 153275 || || || || ||| | || || || || || | | | ||| | | ||||| ||| | Sbjct 1875885 GGCTATTACGGCACCTTCACGCCGCCGGTGATCCTGAGGAACATCATGGAGAACCCTGCT 1875944 Query 153276 TGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGA-AGCTTT 153334 |||||||| |||||||||||||| || ||||| |||||||| |||||||| ||| | Sbjct 1875945 TGGTACACTCAGTACACTCCCTATCAGGCCGAGATCTCTCAGGGCAGATTGGAGAGC-CT 1876003 Query 153335 ATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCAAACGCATCTCT 153394 |||||| ||| || | ||||| || || || || | || || | ||||| || || Sbjct 1876004 GCTCAATTTCCAGACCGTGATCACTGATCTCACCGGCCTGCCGATGTCCAACGCGTCCCT 1876063 Query 153395 ATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 | || || | ||||| || || || || ||| Sbjct 1876064 CCTCGACGAGGGTACTGCTGCGGCTGAGGCCATG 1876097 >seq4399 Length=3202280 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 170299 ACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGTTATGCATGAAAGAAAT 170358 || |||| |||| || | ||| | | ||| | ||||||||||||||||||||| | ||| Sbjct 214271 ACTTGGGCTGATATTATTAACCGCGTTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 214212 Query 170359 GCACACAACTTCCCACTAGACCTAGC 170384 || || |||||||| ||||||||||| Sbjct 214211 GCTCATAACTTCCCTCTAGACCTAGC 214186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579086785015200